D. rerio Gene: calcoco1a - ENSDARG00000036695 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000036695
Namecalcoco1a
Descriptioncalcium binding and coiled-coil domain 1a [Source:ZFIN;Acc:ZDB-GENE-030131-6911]
OrganismDanio rerio (zebrafish)
Synonym(s)calcoco1, fa11a10, wu:fa11a10
Orthologs(s)16 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.09e3
  • 1.09e3
96.34
  • 96.34
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.65e3
  • 1.65e3
94.49
  • 94.49
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
2.36e3
  • 2.36e3
92.11
  • 92.11
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.54e3
  • 2.54e3
91.48
  • 91.48
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000106zygote stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
2.55e3
  • 2.55e3
  • 3.56e3
  • 5.29e3
  • 7.60e3
  • 9.02e3
  • 9.02e3
  • 9.79e3
  • 1.07e4
  • 1.14e4
  • 1.16e4
  • 1.18e4
  • 1.27e4
  • 1.27e4
  • 1.27e4
  • 1.28e4
  • 1.44e4
  • 1.49e4
91.46
  • 91.46
  • 88.10
  • 82.27
  • 74.57
  • 69.81
  • 69.79
  • 67.23
  • 64.19
  • 61.95
  • 61.21
  • 60.47
  • 57.62
  • 57.41
  • 57.33
  • 57.17
  • 51.88
  • 50.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
2.58e3
  • 2.58e3
  • 1.12e4
  • 1.49e4
91.35
  • 91.35
  • 62.51
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
2.70e3
  • 2.70e3
  • 6.08e3
  • 9.18e3
  • 9.46e3
  • 1.05e4
  • 1.17e4
  • 1.29e4
  • 1.30e4
  • 1.32e4
  • 1.44e4
90.97
  • 90.97
  • 79.65
  • 69.27
  • 68.31
  • 64.77
  • 60.80
  • 56.67
  • 56.38
  • 55.95
  • 51.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
2.81e3
  • 2.81e3
  • 5.52e3
90.59
  • 90.59
  • 81.52
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
3.02e3
  • 3.02e3
  • 7.78e3
89.91
  • 89.91
  • 73.95
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.06e3
  • 3.06e3
89.75
  • 89.75
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.64e3
  • 3.64e3
87.83
  • 87.83
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.85e3
  • 3.85e3
  • 4.36e3
87.11
  • 87.11
  • 85.42
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.92e3
  • 3.92e3
86.89
  • 86.89
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.21e3
  • 4.21e3
85.92
  • 85.92
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.29e3
  • 4.29e3
85.64
  • 85.64
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.72e3
  • 4.72e3
84.21
  • 84.21
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
4.94e3
  • 4.94e3
  • 6.15e3
  • 6.24e3
83.46
  • 83.46
  • 79.42
  • 79.10
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
5.12e3
  • 5.12e3
  • 5.17e3
  • 7.13e3
  • 1.17e4
82.86
  • 82.86
  • 82.69
  • 76.14
  • 60.96
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.52e3
  • 7.52e3
74.83
  • 74.83
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.54e3
  • 8.54e3
71.39
  • 71.39
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.58e3
  • 8.58e3
71.26
  • 71.26
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
8.91e3
  • 8.91e3
70.18
  • 70.18
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
9.15e3
  • 9.15e3
69.36
  • 69.36
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.90e3
  • 9.90e3
66.85
  • 66.85
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.09
  • 66.09
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.04e4
  • 1.04e4
65.12
  • 65.12
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
1.12e4
  • 1.12e4
  • 1.36e4
  • 1.60e4
62.61
  • 62.61
  • 54.30
  • 46.47
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.14e4
  • 1.14e4
61.69
  • 61.69
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.85
  • 58.85
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.30e4
  • 1.30e4
56.48
  • 56.48
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
1.36e4
  • 1.36e4
  • 1.45e4
  • 1.48e4
  • 1.59e4
  • 1.68e4
54.51
  • 54.51
  • 51.31
  • 50.55
  • 46.76
  • 43.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Euteleostomi1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000036695.

Cross-references

EnsemblENSDARG00000036695 (calcoco1a)
ZFINZDB-GENE-030131-6911 (calcoco1a)
EMBLBX465864
Uniprot/SWISSPROTA2BGD5, CACO1_DANRE

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