D. rerio Gene: sh3bgrl2 - ENSDARG00000036878 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000036878
Namesh3bgrl2
DescriptionSH3 domain binding glutamate-rich protein like 2 [Source:ZFIN;Acc:ZDB-GENE-040704-38]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:91852
Orthologs(s)17 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.23e3
  • 1.23e3
  • 1.09e4
  • 1.12e4
95.88
  • 95.88
  • 63.61
  • 62.48
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.83e3
  • 2.83e3
  • 5.05e3
90.53
  • 90.53
  • 83.10
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.28e3
  • 3.28e3
89.02
  • 89.02
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • UBERON:00072368 cell stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
3.64e3
  • 3.64e3
  • 5.43e3
  • 6.79e3
  • 8.79e3
  • 9.13e3
  • 1.47e4
  • 1.50e4
87.80
  • 87.80
  • 81.81
  • 77.27
  • 70.57
  • 69.43
  • 50.68
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.76e3
  • 3.76e3
87.40
  • 87.40
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
4.63e3
  • 4.63e3
84.49
  • 84.49
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
5.01e3
  • 5.01e3
  • 1.08e4
83.22
  • 83.22
  • 63.75
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
6.25e3
  • 6.25e3
  • 1.34e4
  • 1.56e4
  • 1.62e4
  • 1.78e4
79.07
  • 79.07
  • 55.10
  • 47.71
  • 45.78
  • 40.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.64e3
  • 7.64e3
74.42
  • 74.42
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
8.56e3
  • 8.56e3
  • 9.96e3
71.36
  • 71.36
  • 66.67
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.69e3
  • 8.69e3
70.91
  • 70.91
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.85e3
  • 8.85e3
70.38
  • 70.38
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
9.85e3
  • 9.85e3
  • 1.01e4
67.00
  • 67.00
  • 66.27
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.88e3
  • 9.88e3
66.91
  • 66.91
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.01
  • 65.01
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000033Hatching:Long-pec
1.05e4
  • 1.05e4
64.99
  • 64.99
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • ZFS:0000035Larval:Protruding-mouth
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.44
  • 62.44
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000035Larval:Protruding-mouth
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0008904neuromast
  • ZFS:0000035Larval:Protruding-mouth
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
  • 1.34e4
57.13
  • 57.13
  • 55.24
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.59
  • 56.59
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
  • 1.35e4
54.97
  • 54.97
  • 54.96
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.35e4
  • 1.35e4
  • 1.58e4
54.87
  • 54.87
  • 47.12
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.12
  • 54.12
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.42e4
  • 1.42e4
52.52
  • 52.52
AEIR
  • AEIR
UBERON:0000165mouth
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001076intestinal bulb
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.53e4
  • 1.53e4
48.89
  • 48.89
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.53e4
  • 1.53e4
  • 1.72e4
48.64
  • 48.64
  • 42.43
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.08
  • 47.08
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.13
  • 43.13
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi16 species16 genesCompare expression
Bilateria17 species17 genesCompare expression

Orthology information comes from OMA : ENSDARG00000036878.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Opisthokonta3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000036878.

Cross-references

EnsemblENSDARG00000036878 (sh3bgrl2)
ZFINZDB-GENE-040704-38 (sh3bgrl2)
EMBLBC074037
Uniprot/SWISSPROTQ6GMK7, SH3L2_DANRE

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