D. rerio Gene: scamp1 - ENSDARG00000036911 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000036911
Namescamp1
Descriptionsecretory carrier membrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1803]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:77214
Orthologs(s)22 orthologs
Paralog(s)5 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
2.36e3
  • 2.36e3
92.11
  • 92.11
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
4.20e3
  • 4.20e3
85.94
  • 85.94
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
5.52e3
  • 5.52e3
  • 7.11e3
  • 8.43e3
  • 8.98e3
  • 9.07e3
81.53
  • 81.53
  • 76.19
  • 71.76
  • 69.94
  • 69.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
5.98e3
  • 5.98e3
  • 6.22e3
  • 6.40e3
  • 6.97e3
  • 6.97e3
  • 7.97e3
  • 9.13e3
  • 1.14e4
  • 1.20e4
79.99
  • 79.99
  • 79.16
  • 78.56
  • 76.66
  • 76.66
  • 73.32
  • 69.43
  • 61.88
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.21e3
  • 6.21e3
79.21
  • 79.21
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.58e3
  • 6.58e3
77.98
  • 77.98
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
6.78e3
  • 6.78e3
  • 8.18e3
77.30
  • 77.30
  • 72.62
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
6.80e3
  • 6.80e3
  • 8.82e3
77.23
  • 77.23
  • 70.47
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
6.83e3
  • 6.83e3
  • 7.68e3
77.14
  • 77.14
  • 74.27
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.86e3
  • 6.86e3
77.03
  • 77.03
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
7.00e3
  • 7.00e3
76.57
  • 76.57
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
7.19e3
  • 7.19e3
  • 7.92e3
75.92
  • 75.92
  • 73.48
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.68e3
  • 7.68e3
74.29
  • 74.29
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
8.80e3
  • 8.80e3
  • 9.65e3
70.53
  • 70.53
  • 67.71
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
8.84e3
  • 8.84e3
70.41
  • 70.41
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
8.90e3
  • 8.90e3
70.21
  • 70.21
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.15e3
  • 9.15e3
69.38
  • 69.38
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.01e4
  • 1.01e4
66.30
  • 66.30
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.44
  • 65.44
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.11
  • 63.11
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.75
  • 62.75
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.44
  • 62.44
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.25
  • 62.25
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.06
  • 62.06
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.13
  • 60.13
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000026Segmentation:14-19 somites
1.20e4
  • 1.20e4
59.97
  • 59.97
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi16 species16 genesCompare expression
Bilateria22 species22 genesCompare expression

Orthology information comes from OMA : ENSDARG00000036911.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Bilateria3 genesCompare expression
Opisthokonta5 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000036911.

Cross-references

EnsemblENSDARG00000036911 (scamp1)
ZFINZDB-GENE-040426-1803 (scamp1)
EMBLBC065684, CR790373
Uniprot/SPTREMBLQ6P0B3, Q6P0B3_DANRE

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