D. rerio Gene: ripply3 - ENSDARG00000036974 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000036974
Nameripply3
Descriptionripply transcriptional repressor 3 [Source:ZFIN;Acc:ZDB-GENE-060113-3]
OrganismDanio rerio (zebrafish)
Synonym(s)dscr6, q05ap9

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
8.61e3
  • 8.61e3
  • 1.16e4
  • 1.21e4
  • 2.16e4
71.16
  • 71.16
  • 61.01
  • 59.57
  • 27.59
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
8.77e3
  • 8.77e3
70.62
  • 70.62
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000022Gastrula:Bud
9.96e3
  • 9.96e3
66.65
  • 66.65
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.27
  • 65.27
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
1.06e4
  • 1.06e4
  • 1.44e4
64.37
  • 64.37
  • 51.74
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.69
  • 62.69
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.16e4
  • 1.16e4
  • 1.37e4
61.08
  • 61.08
  • 54.06
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.77
  • 55.77
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
49.38
  • 49.38
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.73
  • 45.73
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.80e4
  • 1.80e4
  • 2.49e4
39.66
  • 39.66
  • 16.54
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.59
  • 38.59
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
1.89e4
  • 1.89e4
36.83
  • 36.83
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.06e4
  • 2.06e4
31.05
  • 31.05
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
2.15e4
  • 2.15e4
  • 2.15e4
28.11
  • 28.11
  • 27.97
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.15e4
  • 2.15e4
28.10
  • 28.10
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.18e4
  • 2.18e4
27.02
  • 27.02
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.20e4
  • 2.20e4
26.40
  • 26.40
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.32e4
  • 2.32e4
22.38
  • 22.38
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLAB212221, BC124088
EnsemblENSDARG00000036974 (ripply3)
Uniprot/SPTREMBLG1K2L8, G1K2L8_DANRE
Uniprot/SWISSPROTDSCR6_DANRE, Q2WG78
ZFINZDB-GENE-060113-3 (ripply3)

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