D. rerio Gene: LGALS8 (1 to many) - ENSDARG00000037066 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000037066
NameLGALS8 (1 to many)
Descriptionsi:ch211-199l3.2 [Source:ZFIN;Acc:ZDB-GENE-040724-22]
OrganismDanio rerio (zebrafish)
Synonym(s)pcta-1
Orthologs(s)17 orthologs
Paralog(s)6 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.72e3
  • 5.72e3
80.86
  • 80.86
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.80e3
  • 5.80e3
80.59
  • 80.59
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.99e3
  • 5.99e3
79.95
  • 79.95
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.26e3
  • 7.26e3
75.69
  • 75.69
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
7.40e3
  • 7.40e3
75.24
  • 75.24
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
7.87e3
  • 7.87e3
  • 1.24e4
73.66
  • 73.66
  • 58.45
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.02e3
  • 8.02e3
73.13
  • 73.13
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.25e3
  • 8.25e3
72.38
  • 72.38
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.92e3
  • 8.92e3
70.12
  • 70.12
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
9.09e3
  • 9.09e3
69.56
  • 69.56
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
9.97e3
  • 9.97e3
66.62
  • 66.62
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.30
  • 66.30
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.52
  • 65.52
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.31
  • 65.31
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.07e4
  • 1.07e4
  • 1.72e4
64.10
  • 64.10
  • 42.41
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.70
  • 60.70
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.20e4
  • 1.20e4
  • 1.30e4
59.86
  • 59.86
  • 56.31
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.60
  • 59.60
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
1.21e4
  • 1.21e4
  • 1.47e4
  • 1.53e4
  • 1.58e4
  • 1.73e4
59.42
  • 59.42
  • 50.78
  • 48.88
  • 47.16
  • 42.11
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
1.25e4
  • 1.25e4
  • 1.67e4
58.14
  • 58.14
  • 44.03
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.27e4
  • 1.27e4
  • 1.45e4
57.40
  • 57.40
  • 51.33
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.60
  • 54.60
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.07
  • 52.07
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.45e4
  • 1.45e4
51.61
  • 51.61
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.80e4
  • 1.80e4
39.75
  • 39.75
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression
Eukaryota6 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000037066.

Cross-references

EnsemblENSDARG00000037066 (LGALS8 (1 to many))
HGNCHGNC:6569 (LGALS8 (1 to many))
ZFINZDB-GENE-040724-22 (si:ch211-199l3.2)
EMBLAL953887
Uniprot/SPTREMBLF1QIE5, F1QIE5_DANRE, X1WD11, X1WD11_DANRE

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