Gene: tnnc1b - ENSDARG00000037539 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000037539
Name	tnnc1b
Description	troponin C type 1b (slow) [Source:ZFIN;Acc:ZDB-GENE-040625-62]
Organism	Danio rerio (zebrafish)
Synonym(s)	sstnc, stnnc, stnnc {eco:0000313\|embl:aah71546.1,gn eco:0000313\|zfin:zdb-gene-040625-62}, zgc:86932
Paralog(s)	49 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000922	embryo	[+] 5 stages ZFS:0000033Hatching:Long-pec UBERON:0000068embryo stage ZFS:0000037Larval:Day 5 UBERON:0004707pharyngula stage ZFS:0000029Pharyngula:Prim-5	362 362 449 490 522 671	98.79 98.79 98.50 98.36 98.26 97.76	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	376 376	98.75 98.75	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	391 391 507	98.69 98.69 98.30	AEIR AEIR AEIR
UBERON:0000033	head	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000037Larval:Day 5	416 416 6.55e3	98.61 98.61 78.07	AEIR AEIR AEIR
UBERON:0001630	muscle organ	[+] 2 stages UBERON:0000066fully formed stage ZFS:0000033Hatching:Long-pec	435 435 9.96e3	98.55 98.55 66.67	AEIR AEIR AEIR
UBERON:0000948	heart	[+] 2 stages ZFS:0000036Larval:Day 4 UBERON:0000066fully formed stage	528 528 3.34e3	98.24 98.24 88.84	AEIR AEIR AEIR
UBERON:0002385	muscle tissue	[+] 1 stage UBERON:0000066fully formed stage	794 794	97.34 97.34	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	946 946	96.84 96.84	AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.42e3 1.42e3	95.27 95.27	AEIR AEIR
CL:0000189	slow muscle cell	[+] 5 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000030Pharyngula:Prim-15 ZFS:0000033Hatching:Long-pec ZFS:0000031Pharyngula:Prim-25 ZFS:0000036Larval:Day 4	3.73e3 3.73e3 5.97e3 9.96e3 1.12e4 1.49e4	87.50 87.50 80.00 66.67 62.50 50.00	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0001774	skeletal muscle of trunk	[+] 2 stages ZFS:0000037Larval:Day 5 ZFS:0000036Larval:Day 4	4.98e3 4.98e3 1.49e4	83.34 83.34 50.00	AEIR AEIR AEIR
UBERON:0008229	craniocervical region musculature	[+] 3 stages ZFS:0000033Hatching:Long-pec ZFS:0000032Pharyngula:High-pec ZFS:0000037Larval:Day 5	5.97e3 5.97e3 7.47e3 8.96e3	80.00 80.00 75.00 70.00	AEIR AEIR AEIR AEIR
UBERON:0001015	musculature	[+] 5 stages ZFS:0000032Pharyngula:High-pec ZFS:0000033Hatching:Long-pec ZFS:0000030Pharyngula:Prim-15 ZFS:0000031Pharyngula:Prim-25 ZFS:0000037Larval:Day 5	5.98e3 5.98e3 7.47e3 1.09e4 1.09e4 1.16e4	79.99 79.99 74.99 63.63 63.63 61.10	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0007269	pectoral appendage musculature	[+] 4 stages ZFS:0000032Pharyngula:High-pec ZFS:0000033Hatching:Long-pec ZFS:0000036Larval:Day 4 ZFS:0000037Larval:Day 5	7.08e3 7.08e3 7.08e3 7.47e3 1.07e4	76.30 76.30 76.30 75.00 64.28	AEIR AEIR AEIR AEIR AEIR
UBERON:2000498	dilator operculi	[+] 1 stage ZFS:0000036Larval:Day 4	7.47e3 7.47e3	75.00 75.00	AEIR AEIR
UBERON:2007008	ventral intermandibularis anterior	[+] 1 stage ZFS:0000036Larval:Day 4	7.47e3 7.47e3	75.00 75.00	AEIR AEIR
UBERON:2007048	ventral intermandibularis posterior	[+] 1 stage ZFS:0000036Larval:Day 4	7.47e3 7.47e3	75.00 75.00	AEIR AEIR
UBERON:2007052	hyohyoideus	[+] 1 stage ZFS:0000036Larval:Day 4	7.47e3 7.47e3	75.00 75.00	AEIR AEIR
UBERON:0003082	myotome	[+] 7 stages ZFS:0000033Hatching:Long-pec ZFS:0000032Pharyngula:High-pec ZFS:0000031Pharyngula:Prim-25 ZFS:0000030Pharyngula:Prim-15 ZFS:0000029Pharyngula:Prim-5 ZFS:0000027Segmentation:20-25 somites ZFS:0000028Segmentation:26+ somites	8.96e3 8.96e3 9.13e3 1.16e4 1.18e4 1.20e4 1.25e4 1.25e4	69.98 69.98 69.43 61.09 60.50 59.98 58.31 58.31	AEIR AEIR AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:2000384	levator arcus palatini	[+] 1 stage ZFS:0000036Larval:Day 4	9.96e3 9.96e3	66.67 66.67	AEIR AEIR
ZFA:0001086	muscle pioneer (Danio)	[+] 3 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000028Segmentation:26+ somites ZFS:0000027Segmentation:20-25 somites	9.96e3 9.96e3 1.12e4 1.28e4	66.66 66.66 62.49 57.14	AEIR AEIR AEIR AEIR
ZFA:0000003	adaxial cell (Danio)	[+] 1 stage ZFS:0000026Segmentation:14-19 somites	1.12e4 1.12e4	62.48 62.48	AEIR AEIR
UBERON:0000465	material anatomical entity	[+] 2 stages ZFS:0000022Gastrula:Bud ZFS:0000025Segmentation:10-13 somites	1.14e4 1.14e4 1.25e4	61.88 61.88 58.31	AEIR AEIR AEIR
CL:0000190	fast muscle cell	[+] 1 stage ZFS:0000029Pharyngula:Prim-5	1.16e4 1.16e4	61.10 61.10	AEIR AEIR
UBERON:0004734	gastrula	[+] 1 stage ZFS:0000022Gastrula:Bud	1.28e4 1.28e4	57.26 57.26	AEIR AEIR
UBERON:0002329	somite	[+] 2 stages ZFS:0000025Segmentation:10-13 somites ZFS:0000029Pharyngula:Prim-5	1.31e4 1.31e4 1.37e4	56.22 56.22 54.13	AEIR AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.32e4 1.32e4	55.71 55.71	AEIR AEIR
UBERON:0005426	lens vesicle	[+] 1 stage ZFS:0000029Pharyngula:Prim-5	1.34e4 1.34e4	54.97 54.97	AEIR AEIR
UBERON:0000473	testis	[+] 1 stage UBERON:0000066fully formed stage	1.41e4 1.41e4	52.78 52.78	AEIR AEIR
UBERON:0011649	levator operculi	[+] 1 stage ZFS:0000036Larval:Day 4	1.49e4 1.49e4	50.00 50.00	AEIR AEIR
UBERON:2000462	abductor hyohyoid	[+] 1 stage ZFS:0000036Larval:Day 4	1.49e4 1.49e4	50.00 50.00	AEIR AEIR
UBERON:2000522	inferior hyohyoid	[+] 1 stage ZFS:0000036Larval:Day 4	1.49e4 1.49e4	50.00 50.00	AEIR AEIR
UBERON:0000970	eye	[+] 1 stage ZFS:0000031Pharyngula:Prim-25	1.52e4 1.52e4	49.16 49.16	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	1.60e4 1.60e4	46.29 46.29	AEIR AEIR
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	1.75e4 1.75e4	41.25 41.25	AEIR AEIR
UBERON:0000955	brain	[+] 1 stage UBERON:0000066fully formed stage	1.99e4 1.99e4	33.22 33.22	AEIR AEIR
UBERON:0006860	swim bladder	[+] 1 stage UBERON:0000066fully formed stage	2.10e4 2.10e4	29.62 29.62	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

In situ hybridization data: ZFIN
RNA-Seq data: Bgee

Sources of raw data:

In situ hybridization data: ZFIN
RNA-Seq data: GEO

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Vertebrata	1 gene ENSDARG00000011400 tnnc1a	Compare expression	[+]
Eukaryota	49 genes ENSDARG00000008030 myl9b ENSDARG00000008494 myl6 ENSDARG00000009637 rcvrn3 ENSDARG00000010454 guca1a ENSDARG00000011334 ncaldb ENSDARG00000011400 tnnc1a ENSDARG00000011519 myl4 ENSDARG00000011825 cetn3 ENSDARG00000014196 myl1 ENSDARG00000015050 calm3a ENSDARG00000017441 mylz3 ENSDARG00000018397 hpca ENSDARG00000019096 myl7 ENSDARG00000019902 rcvrn2 ENSDARG00000021811 calm1a ENSDARG00000022763 hpcal1 ENSDARG00000023228 vsnl1a ENSDARG00000025326 myl12.2 ENSDARG00000025788 chp2 ENSDARG00000030758 guca1c ENSDARG00000031427 calm2a ENSDARG00000032976 cmlc1 ENSDARG00000033738 zgc:153867 ENSDARG00000034187 calm1b ENSDARG00000038123 myl9a ENSDARG00000041215 cetn4 ENSDARG00000042245 myl13 ENSDARG00000044053 vsnl1b ENSDARG00000044629 guca1d ENSDARG00000052223 rcvrna ENSDARG00000052859 chp1 ENSDARG00000053424 myl2b ENSDARG00000054186 ncs1b ENSDARG00000055229 ncs1a ENSDARG00000059257 RCVRN (1 to many) ENSDARG00000062592 myl10 ENSDARG00000069360 ppp3r1b ENSDARG00000070491 hpcal4 ENSDARG00000070688 ncalda ENSDARG00000070835 tnnc2 ENSDARG00000074057 calm3b ENSDARG00000074323 efcab2 ENSDARG00000092659 ppp3r1a ENSDARG00000095002 TNNC2 (1 to many) ENSDARG00000099712 MYL3 ENSDARG00000099766 myl12.1 ENSDARG00000100825 calm3a ENSDARG00000101510 cetn2 ENSDARG00000104722 MYL2 (1 to many)	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000037539.

Cross-references

Ensembl	ENSDARG00000037539 (tnnc1b)
ZFIN	ZDB-GENE-040625-62 (tnnc1b)
EMBL	AL953864, BC071546
Uniprot/SPTREMBL	Q6IQ64, Q6IQ64_DANRE