D. rerio Gene: ddit4 - ENSDARG00000037618 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000037618
Nameddit4
DescriptionDNA-damage-inducible transcript 4 [Source:ZFIN;Acc:ZDB-GENE-031002-35]
OrganismDanio rerio (zebrafish)
Synonym(s)redd1, rtp801, sb:cb821, zgc:64114

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
68.5
  • 68.5
  • 400
  • 8.54e3
  • 1.17e4
  • 1.17e4
99.77
  • 99.77
  • 98.66
  • 71.40
  • 60.86
  • 60.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
146
  • 146
99.51
  • 99.51
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
294
  • 294
  • 3.41e3
  • 4.90e3
  • 7.10e3
  • 8.17e3
  • 1.05e4
99.02
  • 99.02
  • 88.59
  • 83.60
  • 76.24
  • 72.66
  • 64.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
762
  • 762
97.45
  • 97.45
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
773
  • 773
  • 1.74e3
97.41
  • 97.41
  • 94.18
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
843
  • 843
97.18
  • 97.18
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.05e3
  • 1.05e3
96.49
  • 96.49
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.06e3
  • 1.06e3
96.46
  • 96.46
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.42e3
  • 1.42e3
95.25
  • 95.25
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.84e3
  • 1.84e3
93.85
  • 93.85
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.45e3
  • 2.45e3
91.79
  • 91.79
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
2.46e3
  • 2.46e3
  • 3.75e3
  • 4.48e3
  • 5.24e3
  • 5.68e3
  • 5.76e3
  • 6.82e3
  • 9.29e3
  • 1.78e4
91.75
  • 91.75
  • 87.45
  • 85.00
  • 82.47
  • 80.97
  • 80.73
  • 77.17
  • 68.88
  • 40.54
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
2.80e3
  • 2.80e3
  • 1.50e4
90.62
  • 90.62
  • 49.89
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.11e3
  • 3.11e3
89.58
  • 89.58
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.26e3
  • 3.26e3
89.09
  • 89.09
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
3.65e3
  • 3.65e3
  • 1.19e4
  • 1.49e4
87.78
  • 87.78
  • 60.04
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
4.42e3
  • 4.42e3
85.21
  • 85.21
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
4.43e3
  • 4.43e3
  • 1.71e4
85.17
  • 85.17
  • 42.80
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.64e3
  • 4.64e3
84.46
  • 84.46
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.79e3
  • 4.79e3
83.97
  • 83.97
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.06e3
  • 5.06e3
83.05
  • 83.05
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
5.19e3
  • 5.19e3
82.62
  • 82.62
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
5.34e3
  • 5.34e3
  • 1.34e4
  • 1.41e4
  • 1.41e4
82.14
  • 82.14
  • 55.24
  • 52.92
  • 52.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
5.47e3
  • 5.47e3
  • 8.72e3
81.69
  • 81.69
  • 70.82
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
5.81e3
  • 5.81e3
  • 7.74e3
  • 1.61e4
80.56
  • 80.56
  • 74.07
  • 46.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
6.07e3
  • 6.07e3
79.67
  • 79.67
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
6.21e3
  • 6.21e3
79.20
  • 79.20
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000026Segmentation:14-19 somites
6.97e3
  • 6.97e3
76.66
  • 76.66
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000026Segmentation:14-19 somites
7.12e3
  • 7.12e3
76.18
  • 76.18
AEIR
  • AEIR
UBERON:0008896post-hyoid pharyngeal arch
  • ZFS:0000036Larval:Day 4
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0001892rhombomere
  • ZFS:0000026Segmentation:14-19 somites
7.47e3
  • 7.47e3
74.99
  • 74.99
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000026Segmentation:14-19 somites
8.22e3
  • 8.22e3
72.48
  • 72.48
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
8.30e3
  • 8.30e3
  • 9.21e3
  • 1.07e4
  • 1.09e4
72.21
  • 72.21
  • 69.17
  • 64.26
  • 63.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
8.33e3
  • 8.33e3
72.12
  • 72.12
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
8.54e3
  • 8.54e3
  • 8.96e3
  • 8.96e3
  • 9.96e3
71.42
  • 71.42
  • 69.99
  • 69.99
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000014Blastula:Sphere
  • UBERON:0000106zygote stage
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • ZFS:0000049segmentation
  • UBERON:0000109gastrula stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
8.96e3
  • 8.96e3
  • 1.03e4
  • 1.41e4
  • 1.45e4
  • 1.45e4
  • 1.49e4
  • 1.77e4
  • 1.78e4
  • 1.78e4
  • 1.78e4
  • 1.78e4
  • 1.78e4
  • 1.79e4
  • 1.81e4
  • 1.83e4
  • 1.83e4
69.99
  • 69.99
  • 65.54
  • 52.63
  • 51.56
  • 51.51
  • 49.99
  • 40.62
  • 40.56
  • 40.55
  • 40.43
  • 40.38
  • 40.38
  • 40.02
  • 39.42
  • 38.62
  • 38.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000026Segmentation:14-19 somites
8.97e3
  • 8.97e3
69.98
  • 69.98
AEIR
  • AEIR
UBERON:0009614hindbrain neural plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
9.19e3
  • 9.19e3
  • 9.19e3
  • 9.60e3
69.22
  • 69.22
  • 69.22
  • 67.85
AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
9.67e3
  • 9.67e3
  • 9.96e3
  • 1.08e4
67.63
  • 67.63
  • 66.65
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
9.79e3
  • 9.79e3
  • 1.02e4
  • 1.06e4
  • 1.37e4
  • 1.66e4
67.21
  • 67.21
  • 65.89
  • 64.56
  • 54.13
  • 44.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002346neurectoderm
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
9.96e3
  • 9.96e3
  • 1.49e4
  • 1.49e4
  • 1.49e4
66.67
  • 66.67
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2007045midbrain hindbrain boundary neural keel
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
9.96e3
  • 9.96e3
  • 1.03e4
  • 1.07e4
66.66
  • 66.66
  • 65.37
  • 64.27
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
1.09e4
  • 1.09e4
  • 1.34e4
  • 1.34e4
  • 1.38e4
  • 1.41e4
63.63
  • 63.63
  • 55.24
  • 54.99
  • 53.83
  • 52.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004879marginal zone of embryo
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
1.10e4
  • 1.10e4
  • 1.17e4
  • 1.18e4
  • 1.20e4
  • 1.20e4
  • 1.21e4
63.14
  • 63.14
  • 60.70
  • 60.50
  • 59.98
  • 59.98
  • 59.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002541germ ring
  • ZFS:0000019Gastrula:Shield
1.12e4
  • 1.12e4
62.49
  • 62.49
AEIR
  • AEIR
UBERON:0003063prechordal plate
  • ZFS:0000021Gastrula:90%-epiboly
1.19e4
  • 1.19e4
60.00
  • 60.00
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.99
  • 59.99
AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.34e4
  • 1.34e4
  • 1.41e4
  • 1.41e4
54.97
  • 54.97
  • 52.75
  • 52.75
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001997olfactory epithelium
  • UBERON:0000104life cycle
1.36e4
  • 1.36e4
54.59
  • 54.59
AEIR
  • AEIR
UBERON:0002064common cardinal vein
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
49.51
  • 49.51
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
41.05
  • 41.05
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC053258, FP102054, HM114348
EnsemblENSDARG00000037618 (ddit4)
Uniprot/SPTREMBLH9LFU8, H9LFU8_DANRE, U3JA89, U3JA89_DANRE
Uniprot/SWISSPROTDDIT4_DANRE, Q7T346
ZFINZDB-GENE-031002-35 (ddit4)

Do not show this banner again