D. rerio Gene: nkx3.2 - ENSDARG00000037639 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000037639
Namenkx3.2
DescriptionNK3 homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-030127-1]
OrganismDanio rerio (zebrafish)
Synonym(s)bapx1

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004362pharyngeal arch 1
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000036Larval:Day 4
  • ZFS:0000034Hatching:Pec-fin
2.49e3
  • 2.49e3
  • 3.73e3
  • 4.98e3
  • 1.49e4
  • 1.49e4
91.67
  • 91.67
  • 87.50
  • 83.34
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001708jaw skeleton
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
4.98e3
  • 4.98e3
  • 1.12e4
  • 1.49e4
83.33
  • 83.33
  • 62.50
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003089sclerotome
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
4.98e3
  • 4.98e3
  • 7.47e3
  • 7.47e3
  • 1.49e4
  • 1.49e4
83.33
  • 83.33
  • 75.00
  • 75.00
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
5.60e3
  • 5.60e3
  • 7.03e3
  • 8.40e3
  • 1.15e4
81.24
  • 81.24
  • 76.46
  • 71.86
  • 61.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000982skeletal joint
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
8.73e3
  • 8.73e3
  • 1.19e4
  • 1.32e4
  • 1.34e4
  • 1.39e4
  • 1.41e4
  • 1.56e4
70.76
  • 70.76
  • 60.32
  • 55.90
  • 55.10
  • 53.54
  • 52.83
  • 47.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
8.74e3
  • 8.74e3
  • 1.08e4
  • 1.16e4
70.73
  • 70.73
  • 63.94
  • 61.06
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003066pharyngeal arch 2
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000034Hatching:Pec-fin
8.96e3
  • 8.96e3
  • 1.49e4
70.00
  • 70.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0008904neuromast
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
9.60e3
  • 9.60e3
  • 1.12e4
67.85
  • 67.85
  • 62.49
AEIR
  • AEIR
  • AEIR
UBERON:0007690early pharyngeal endoderm
  • ZFS:0000030Pharyngula:Prim-15
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.95
  • 64.95
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.07e4
  • 1.07e4
64.16
  • 64.16
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000039Larval:Days 7-13
  • ZFS:0000040Larval:Days 14-20
1.15e4
  • 1.15e4
  • 1.49e4
  • 1.49e4
61.53
  • 61.53
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
1.17e4
  • 1.17e4
60.68
  • 60.68
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
  • 1.81e4
57.81
  • 57.81
  • 39.33
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
1.28e4
  • 1.28e4
  • 1.47e4
57.01
  • 57.01
  • 50.77
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
1.34e4
  • 1.34e4
  • 1.42e4
  • 1.48e4
55.25
  • 55.25
  • 52.38
  • 50.34
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.87
  • 52.87
AEIR
  • AEIR
CL:0000138chondrocyte
  • ZFS:0000039Larval:Days 7-13
  • ZFS:0000040Larval:Days 14-20
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001076neural spine
  • ZFS:0000040Larval:Days 14-20
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0003278skeleton of lower jaw
  • ZFS:0000034Hatching:Pec-fin
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0004744articular/anguloarticular
  • ZFS:0000039Larval:Days 7-13
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001364hemal spine
  • ZFS:0000040Larval:Days 14-20
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0006597quadrate bone
  • ZFS:0000039Larval:Days 7-13
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0011152dorsal hyoid arch skeleton
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001129pharyngeal pouches 2-6
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001420anal fin pterygiophore
  • ZFS:0000039Larval:Days 7-13
  • ZFS:0000040Larval:Days 14-20
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
  • 1.57e4
  • 2.36e4
50.00
  • 50.00
  • 47.42
  • 20.93
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0011153ventral hyoid arch skeleton
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0005884hyoid arch skeleton
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0011085palatoquadrate arch
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0008896post-hyoid pharyngeal arch
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
  • 1.91e4
46.86
  • 46.86
  • 35.90
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.21
  • 46.21
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.67e4
  • 1.67e4
43.92
  • 43.92
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.30
  • 41.30
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.85e4
  • 1.85e4
38.08
  • 38.08
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.91e4
  • 1.91e4
36.04
  • 36.04
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.94e4
  • 1.94e4
35.06
  • 35.06
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.09e4
  • 2.09e4
30.08
  • 30.08
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLAY225416, BC162289, BC162299, CU855945
EnsemblENSDARG00000037639 (nkx3.2)
Uniprot/SPTREMBLQ803Z6, Q803Z6_DANRE
ZFINZDB-GENE-030127-1 (nkx3.2)

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