D. rerio Gene: actb1 - ENSDARG00000037746 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000037746
Nameactb1
Descriptionactin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
OrganismDanio rerio (zebrafish)
Synonym(s)actb, actba, actine, b-actzf, bact, bactin1, bactzf, o73815, p12714, q6p3k9, wu:fd18f05

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
21.0
  • 21.0
99.93
  • 99.93
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
53.4
  • 53.4
  • 2.86e3
99.82
  • 99.82
  • 90.42
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
76.0
  • 76.0
99.75
  • 99.75
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
76.0
  • 76.0
  • 76.7
  • 104
  • 108
  • 160
99.75
  • 99.75
  • 99.75
  • 99.66
  • 99.64
  • 99.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
79.0
  • 79.0
99.74
  • 99.74
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
90.0
  • 90.0
  • 105
99.70
  • 99.70
  • 99.65
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
90.0
  • 90.0
99.70
  • 99.70
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
99.0
  • 99.0
99.67
  • 99.67
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
106
  • 106
  • 167
99.65
  • 99.65
  • 99.44
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
118
  • 118
  • 1.08e4
99.61
  • 99.61
  • 63.85
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
122
  • 122
  • 947
99.60
  • 99.60
  • 96.83
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
126
  • 126
  • 966
  • 9.77e3
99.58
  • 99.58
  • 96.77
  • 67.29
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
147
  • 147
  • 1.26e4
99.51
  • 99.51
  • 57.90
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
148
  • 148
99.51
  • 99.51
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
151
  • 151
99.50
  • 99.50
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
170
  • 170
99.43
  • 99.43
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
174
  • 174
99.42
  • 99.42
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
177
  • 177
  • 1.73e3
99.41
  • 99.41
  • 94.22
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
267
  • 267
99.11
  • 99.11
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
311
  • 311
98.96
  • 98.96
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000049segmentation
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • UBERON:0000104life cycle
364
  • 364
  • 482
  • 483
  • 725
  • 830
  • 1.56e3
  • 2.64e3
  • 3.27e3
  • 5.43e3
  • 8.96e3
  • 1.03e4
98.78
  • 98.78
  • 98.39
  • 98.39
  • 97.57
  • 97.22
  • 94.77
  • 91.16
  • 89.05
  • 81.81
  • 70.00
  • 65.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
652
  • 652
97.82
  • 97.82
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
748
  • 748
97.50
  • 97.50
AEIR
  • AEIR
UBERON:0008897fin
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
847
  • 847
  • 6.13e3
97.17
  • 97.17
  • 79.46
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.12e3
  • 1.12e3
96.26
  • 96.26
AEIR
  • AEIR
UBERON:0001997olfactory epithelium
  • UBERON:0000104life cycle
1.40e3
  • 1.40e3
95.31
  • 95.31
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.70e3
  • 1.70e3
94.33
  • 94.33
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • UBERON:0000066fully formed stage
2.49e3
  • 2.49e3
91.67
  • 91.67
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
3.20e3
  • 3.20e3
89.28
  • 89.28
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.06e3
  • 4.06e3
86.42
  • 86.42
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:0000104life cycle
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000026Segmentation:14-19 somites
4.08e3
  • 4.08e3
  • 6.40e3
  • 6.40e3
  • 6.40e3
  • 6.64e3
  • 6.89e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.97e3
  • 8.53e3
  • 8.54e3
  • 8.71e3
  • 8.79e3
  • 8.79e3
  • 8.96e3
  • 8.96e3
  • 9.13e3
  • 9.13e3
  • 9.13e3
  • 9.71e3
  • 9.96e3
  • 9.96e3
86.36
  • 86.36
  • 78.57
  • 78.57
  • 78.57
  • 77.77
  • 76.92
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 73.32
  • 71.43
  • 71.41
  • 70.82
  • 70.57
  • 70.57
  • 69.99
  • 69.98
  • 69.43
  • 69.43
  • 69.43
  • 67.48
  • 66.66
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
4.92e3
  • 4.92e3
  • 5.11e3
83.52
  • 83.52
  • 82.88
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

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