D. rerio Gene: pvalb1 - ENSDARG00000037789 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000037789
Namepvalb1
Descriptionparvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:86939
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
3.77
  • 3.77
  • 53.7
  • 139
  • 276
  • 308
  • 537
  • 1.01e3
99.99
  • 99.99
  • 99.82
  • 99.54
  • 99.08
  • 98.97
  • 98.21
  • 96.62
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.00
  • 6.00
99.98
  • 99.98
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
6.45
  • 6.45
  • 11.3
  • 18.2
99.98
  • 99.98
  • 99.97
  • 99.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000022Gastrula:Bud
7.54
  • 7.54
  • 11.8
  • 11.9
  • 37.7
  • 42.0
  • 241
  • 914
  • 1.44e4
99.98
  • 99.98
  • 99.96
  • 99.96
  • 99.88
  • 99.86
  • 99.20
  • 96.94
  • 51.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
16.0
  • 16.0
99.95
  • 99.95
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
17.6
  • 17.6
99.94
  • 99.94
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
21.5
  • 21.5
99.93
  • 99.93
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
159
  • 159
  • 204
99.47
  • 99.47
  • 99.32
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
223
  • 223
  • 1.13e4
99.26
  • 99.26
  • 62.09
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
314
  • 314
98.95
  • 98.95
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
770
  • 770
97.42
  • 97.42
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.21e3
  • 1.21e3
95.95
  • 95.95
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.44e3
  • 1.44e3
95.18
  • 95.18
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
4.70e3
  • 4.70e3
  • 1.42e4
84.25
  • 84.25
  • 52.33
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
6.74e3
  • 6.74e3
77.45
  • 77.45
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.48e3
  • 7.48e3
74.95
  • 74.95
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.06e3
  • 8.06e3
73.01
  • 73.01
AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
9.96e3
  • 9.96e3
  • 1.02e4
  • 1.12e4
  • 1.12e4
  • 1.16e4
  • 1.20e4
  • 1.25e4
  • 1.25e4
66.65
  • 66.65
  • 65.77
  • 62.49
  • 62.48
  • 61.09
  • 59.98
  • 58.31
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.02e4
  • 1.02e4
  • 1.75e4
65.92
  • 65.92
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.40
  • 64.40
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.84
  • 54.84
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
50.27
  • 50.27
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.06e4
  • 2.06e4
31.17
  • 31.17
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.15e4
  • 2.15e4
28.08
  • 28.08
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Clupeocephala3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000037789.

Cross-references

EnsemblENSDARG00000037789 (pvalb1)
ZFINZDB-GENE-040625-57 (pvalb1)
EMBLAF467914, BC071552, CR352263
Uniprot/SPTREMBLQ804W0, Q804W0_DANRE

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