D. rerio Gene: nptx2a - ENSDARG00000037794 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000037794
Namenptx2a
Descriptionneuronal pentraxin 2a [Source:ZFIN;Acc:ZDB-GENE-060707-1]
OrganismDanio rerio (zebrafish)
Synonym(s)narp, nptx2
Orthologs(s)19 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000038Larval:Day 6
1.38e3
  • 1.38e3
  • 1.29e4
  • 1.49e4
95.40
  • 95.40
  • 56.65
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.56e3
  • 1.56e3
94.79
  • 94.79
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
6.58e3
  • 6.58e3
77.98
  • 77.98
AEIR
  • AEIR
UBERON:0000007pituitary gland
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
9.96e3
  • 9.96e3
  • 1.12e4
66.66
  • 66.66
  • 62.50
AEIR
  • AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000038Larval:Day 6
1.12e4
  • 1.12e4
  • 1.12e4
  • 1.49e4
62.50
  • 62.50
  • 62.49
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000038Larval:Day 6
  • ZFS:0000035Larval:Protruding-mouth
1.17e4
  • 1.17e4
  • 1.31e4
  • 1.49e4
  • 1.49e4
60.70
  • 60.70
  • 56.23
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000038Larval:Day 6
1.18e4
  • 1.18e4
  • 1.37e4
  • 1.49e4
60.50
  • 60.50
  • 54.15
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.21e4
  • 1.21e4
  • 1.49e4
59.36
  • 59.36
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.28e4
  • 1.28e4
  • 1.34e4
  • 1.34e4
57.11
  • 57.11
  • 55.24
  • 54.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001904habenula
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000038Larval:Day 6
  • ZFS:0000035Larval:Protruding-mouth
1.31e4
  • 1.31e4
  • 1.49e4
  • 1.49e4
56.24
  • 56.24
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
  • 2.20e4
53.73
  • 53.73
  • 26.36
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.14
  • 51.14
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000038Larval:Day 6
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.52
  • 41.52
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.98e4
  • 1.98e4
  • 2.09e4
33.59
  • 33.59
  • 30.06
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.00e4
  • 2.00e4
32.91
  • 32.91
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
2.07e4
  • 2.07e4
  • 2.08e4
  • 2.11e4
  • 2.11e4
  • 2.12e4
30.55
  • 30.55
  • 30.46
  • 29.41
  • 29.23
  • 29.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.11e4
  • 2.11e4
29.20
  • 29.20
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.27e4
  • 2.27e4
24.03
  • 24.03
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.27e4
  • 2.27e4
23.87
  • 23.87
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Neopterygii1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000037794.

Cross-references

EnsemblENSDARG00000037794 (nptx2a)
ZFINZDB-GENE-060707-1 (nptx2a)
EMBLCU138531, FJ232033, KM036426
Uniprot/SPTREMBLD2D0C1, D2D0C1_DANRE, F1R1R6, F1R1R6_DANRE, X1WGA2, X1WGA2_DANRE

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