D. rerio Gene: mitfb - ENSDARG00000037833 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000037833
Namemitfb
Descriptionmicrophthalmia-associated transcription factor b [Source:ZFIN;Acc:ZDB-GENE-010919-1]
OrganismDanio rerio (zebrafish)
Synonym(s)mitf1
Orthologs(s)18 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • UBERON:0000104life cycle
2.55e3
  • 2.55e3
  • 4.41e3
  • 4.98e3
  • 6.54e3
  • 6.64e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.97e3
  • 6.97e3
  • 7.03e3
  • 7.03e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 8.96e3
  • 8.96e3
  • 1.50e4
91.46
  • 91.46
  • 85.22
  • 83.33
  • 78.12
  • 77.77
  • 77.77
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.66
  • 76.66
  • 76.46
  • 76.46
  • 74.99
  • 74.99
  • 74.99
  • 74.99
  • 73.52
  • 69.99
  • 69.99
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.10
  • 64.10
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000034Hatching:Pec-fin
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0003072optic cup
  • ZFS:0000027Segmentation:20-25 somites
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
1.21e4
  • 1.21e4
  • 1.39e4
59.50
  • 59.50
  • 53.31
AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000026Segmentation:14-19 somites
1.24e4
  • 1.24e4
58.32
  • 58.32
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.51
  • 54.51
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.40e4
  • 1.40e4
53.13
  • 53.13
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.41e4
  • 1.41e4
  • 1.77e4
52.86
  • 52.86
  • 40.79
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.10
  • 51.10
AEIR
  • AEIR
CL:0000148melanocyte
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002264olfactory bulb
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
49.39
  • 49.39
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.14
  • 42.14
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.41
  • 41.41
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.84e4
  • 1.84e4
38.42
  • 38.42
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
36.79
  • 36.79
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.92e4
  • 1.92e4
35.86
  • 35.86
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.05e4
  • 2.05e4
31.34
  • 31.34
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.19e4
  • 2.19e4
26.77
  • 26.77
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.22e4
  • 2.22e4
25.65
  • 25.65
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
2.30e4
  • 2.30e4
23.03
  • 23.03
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
2.41e4
  • 2.41e4
  • 2.41e4
19.24
  • 19.24
  • 19.22
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Neopterygii1 geneCompare expression
Vertebrata3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000037833.

Cross-references

EnsemblENSDARG00000037833 (mitfb)
ZFINZDB-GENE-010919-1 (mitfb)
EMBLJN105118
Uniprot/SPTREMBLF1Q885, F1Q885_DANRE, G5CIM9, G5CIM9_DANRE

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