D. rerio Gene: col9a3 - ENSDARG00000037845 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000037845
Namecol9a3
Descriptioncollagen, type IX, alpha 3 [Source:ZFIN;Acc:ZDB-GENE-030131-9799]
OrganismDanio rerio (zebrafish)
Synonym(s)cb367, sb:cb367, si:ch73-162j3.1, wu:fa04f01

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
451
  • 451
  • 780
  • 1.01e3
98.49
  • 98.49
  • 97.39
  • 96.64
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000104life cycle
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000068embryo stage
547
  • 547
  • 698
  • 778
  • 929
  • 1.54e3
  • 1.58e3
  • 1.96e3
  • 2.84e3
  • 4.71e3
  • 1.00e4
  • 1.32e4
  • 1.39e4
  • 1.50e4
98.17
  • 98.17
  • 97.67
  • 97.40
  • 96.89
  • 94.86
  • 94.71
  • 93.45
  • 90.48
  • 84.21
  • 66.40
  • 55.81
  • 53.57
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.09e3
  • 1.09e3
  • 1.21e3
  • 1.22e3
  • 1.43e3
  • 1.76e3
  • 2.03e3
  • 2.36e3
  • 3.64e3
  • 5.82e3
  • 1.12e4
96.36
  • 96.36
  • 95.95
  • 95.93
  • 95.23
  • 94.12
  • 93.22
  • 92.11
  • 87.81
  • 80.50
  • 62.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.18e3
  • 1.18e3
  • 1.33e4
96.06
  • 96.06
  • 55.57
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.65e3
  • 1.65e3
94.47
  • 94.47
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
3.43e3
  • 3.43e3
  • 1.82e4
88.53
  • 88.53
  • 39.19
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
5.02e3
  • 5.02e3
  • 1.58e4
83.21
  • 83.21
  • 47.26
AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
6.89e3
  • 6.89e3
  • 7.47e3
  • 9.34e3
  • 9.67e3
  • 1.05e4
  • 1.08e4
  • 1.34e4
  • 1.36e4
  • 1.36e4
76.92
  • 76.92
  • 74.99
  • 68.74
  • 67.63
  • 64.98
  • 63.97
  • 54.97
  • 54.52
  • 54.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.79e3
  • 7.79e3
73.93
  • 73.93
AEIR
  • AEIR
UBERON:0003058hypochord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000031Pharyngula:Prim-25
8.54e3
  • 8.54e3
  • 9.19e3
  • 9.96e3
  • 9.96e3
  • 1.12e4
71.42
  • 71.42
  • 69.22
  • 66.66
  • 66.66
  • 62.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006904head mesenchyme from mesoderm
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.96e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
66.66
  • 66.66
  • 66.66
  • 66.66
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000926mesoderm
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.96e3
  • 9.96e3
  • 9.96e3
  • 1.03e4
66.65
  • 66.65
  • 66.65
  • 65.61
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005253head mesenchyme
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
9.96e3
  • 9.96e3
  • 1.07e4
66.65
  • 66.65
  • 64.27
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.02
  • 66.02
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
  • 1.09e4
  • 1.27e4
63.65
  • 63.65
  • 63.38
  • 57.63
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007390pectoral appendage cartilage tissue
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.12e4
  • 1.12e4
  • 1.12e4
62.49
  • 62.49
  • 62.49
AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000022Gastrula:Bud
1.14e4
  • 1.14e4
61.88
  • 61.88
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
1.14e4
  • 1.14e4
  • 1.49e4
61.75
  • 61.75
  • 50.21
AEIR
  • AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.18e4
  • 1.18e4
  • 1.18e4
60.50
  • 60.50
  • 60.50
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.47
  • 56.47
AEIR
  • AEIR
UBERON:0008895splanchnocranium
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.31e4
  • 1.31e4
  • 1.31e4
56.24
  • 56.24
  • 56.24
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.33e4
  • 1.33e4
55.44
  • 55.44
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
  • 1.50e4
55.16
  • 55.16
  • 49.94
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
1.37e4
  • 1.37e4
54.08
  • 54.08
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.56e4
  • 1.56e4
47.88
  • 47.88
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.31
  • 45.31
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.83
  • 40.83
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.04e4
  • 2.04e4
31.78
  • 31.78
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBX323461
EnsemblENSDARG00000037845 (col9a3)
Uniprot/SPTREMBLF1R1F1, F1R1F1_DANRE
ZFINZDB-GENE-030131-9799 (col9a3)

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