D. rerio Gene: znfl1 - ENSDARG00000037914 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000037914
Nameznfl1
Descriptionzinc finger-like gene 1 [Source:ZFIN;Acc:ZDB-GENE-030828-6]
OrganismDanio rerio (zebrafish)
Synonym(s)cb17, sb:cb17, yf-50
Paralog(s)12 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
2.50e3
  • 2.50e3
  • 7.19e3
91.64
  • 91.64
  • 75.92
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
9.88e3
  • 9.88e3
66.91
  • 66.91
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000026Segmentation:14-19 somites
9.96e3
  • 9.96e3
66.65
  • 66.65
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.05e4
  • 1.05e4
  • 1.09e4
  • 1.09e4
64.98
  • 64.98
  • 63.61
  • 63.61
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004879marginal zone of embryo
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
1.10e4
  • 1.10e4
  • 1.17e4
  • 1.18e4
  • 1.20e4
  • 1.20e4
  • 1.21e4
63.14
  • 63.14
  • 60.70
  • 60.50
  • 59.98
  • 59.98
  • 59.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.28e4
  • 1.28e4
  • 1.42e4
  • 1.42e4
57.11
  • 57.11
  • 52.47
  • 52.47
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.30e4
  • 1.30e4
  • 1.42e4
  • 1.42e4
56.49
  • 56.49
  • 52.47
  • 52.47
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
  • 1.34e4
  • 1.37e4
54.97
  • 54.97
  • 54.97
  • 54.13
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
  • 2.05e4
43.82
  • 43.82
  • 31.46
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.95e4
  • 1.95e4
34.69
  • 34.69
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
2.14e4
  • 2.14e4
28.48
  • 28.48
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.43e4
  • 2.43e4
18.47
  • 18.47
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.54e4
  • 2.54e4
14.94
  • 14.94
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Clupeocephala12 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000037914.

Cross-references

EnsemblENSDARG00000037914 (znfl1)
ZFINZDB-GENE-030828-6 (znfl1)
EMBLCR387987
Uniprot/SPTREMBLF1QLJ5, F1QLJ5_DANRE

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