D. rerio Gene: rnf113a - ENSDARG00000037930 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000037930
Namernf113a
Descriptionring finger protein 113A [Source:ZFIN;Acc:ZDB-GENE-040825-1]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fj91a07, zgc:110007, znf183

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
2.78e3
  • 2.78e3
  • 3.71e3
  • 5.97e3
  • 6.58e3
  • 7.01e3
  • 7.04e3
90.68
  • 90.68
  • 87.57
  • 80.02
  • 77.96
  • 76.53
  • 76.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
3.02e3
  • 3.02e3
  • 3.56e3
  • 6.64e3
  • 8.01e3
  • 8.47e3
89.90
  • 89.90
  • 88.09
  • 77.78
  • 73.19
  • 71.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.14e3
  • 3.14e3
89.49
  • 89.49
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
3.70e3
  • 3.70e3
87.60
  • 87.60
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.92e3
  • 3.92e3
86.88
  • 86.88
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
3.93e3
  • 3.93e3
  • 4.21e3
  • 4.77e3
  • 5.58e3
  • 5.77e3
  • 6.48e3
  • 6.56e3
  • 7.84e3
  • 7.94e3
  • 8.84e3
86.84
  • 86.84
  • 85.90
  • 84.02
  • 81.33
  • 80.70
  • 78.31
  • 78.02
  • 73.76
  • 73.41
  • 70.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000106zygote stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
4.46e3
  • 4.46e3
  • 4.96e3
  • 4.98e3
  • 5.00e3
  • 5.12e3
  • 5.32e3
  • 6.20e3
  • 6.26e3
  • 6.54e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.87e3
  • 6.97e3
  • 7.03e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 8.71e3
  • 8.96e3
  • 8.96e3
  • 9.36e3
  • 9.40e3
  • 9.56e3
  • 9.77e3
  • 1.17e4
85.07
  • 85.07
  • 83.38
  • 83.33
  • 83.25
  • 82.86
  • 82.18
  • 79.25
  • 79.04
  • 78.12
  • 77.77
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.99
  • 76.66
  • 76.46
  • 74.99
  • 74.99
  • 73.52
  • 70.85
  • 69.99
  • 69.99
  • 68.65
  • 68.53
  • 68.01
  • 67.28
  • 60.91
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.74e3
  • 4.74e3
84.12
  • 84.12
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.79e3
  • 4.79e3
83.98
  • 83.98
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.81e3
  • 4.81e3
83.89
  • 83.89
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.09e3
  • 5.09e3
82.98
  • 82.98
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
5.09e3
  • 5.09e3
  • 8.66e3
82.96
  • 82.96
  • 71.01
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.10e3
  • 5.10e3
82.94
  • 82.94
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.16e3
  • 5.16e3
82.73
  • 82.73
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
5.22e3
  • 5.22e3
82.54
  • 82.54
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
5.52e3
  • 5.52e3
  • 6.06e3
  • 6.37e3
  • 1.10e4
81.51
  • 81.51
  • 79.71
  • 78.67
  • 63.15
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.66e3
  • 5.66e3
81.04
  • 81.04
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.79e3
  • 5.79e3
80.63
  • 80.63
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
5.97e3
  • 5.97e3
80.02
  • 80.02
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
6.15e3
  • 6.15e3
79.40
  • 79.40
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.36e3
  • 6.36e3
78.72
  • 78.72
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.45e3
  • 6.45e3
78.41
  • 78.41
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.56e3
  • 6.56e3
78.03
  • 78.03
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.77e3
  • 6.77e3
77.32
  • 77.32
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
6.92e3
  • 6.92e3
  • 8.91e3
76.82
  • 76.82
  • 70.15
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
7.23e3
  • 7.23e3
  • 8.59e3
75.80
  • 75.80
  • 71.25
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.54e3
  • 7.54e3
74.75
  • 74.75
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.73e3
  • 7.73e3
74.13
  • 74.13
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
8.09e3
  • 8.09e3
  • 9.00e3
72.92
  • 72.92
  • 69.86
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
8.55e3
  • 8.55e3
  • 8.71e3
  • 9.50e3
71.36
  • 71.36
  • 70.84
  • 68.20
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
9.03e3
  • 9.03e3
69.76
  • 69.76
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
9.34e3
  • 9.34e3
68.73
  • 68.73
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.72e3
  • 9.72e3
67.45
  • 67.45
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLAY648809, BC095125, BX324157
EnsemblENSDARG00000037930 (rnf113a)
Uniprot/SPTREMBLQ6DRF0, Q6DRF0_DANRE
ZFINZDB-GENE-040825-1 (rnf113a)

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