D. rerio Gene: lin7b - ENSDARG00000037932 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000037932
Namelin7b
Descriptionlin-7 homolog B (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-041011-1]
OrganismDanio rerio (zebrafish)
Synonym(s)fj41b11, fj63g03, wu:fj41b11, wu:fj63g03, zgc:109997
Orthologs(s)14 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
1.69e3
  • 1.69e3
  • 3.04e3
  • 5.98e3
  • 7.36e3
94.36
  • 94.36
  • 89.83
  • 79.97
  • 75.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.70e3
  • 1.70e3
  • 7.10e3
94.31
  • 94.31
  • 76.22
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000036Larval:Day 4
1.84e3
  • 1.84e3
  • 7.12e3
  • 9.96e3
93.84
  • 93.84
  • 76.15
  • 66.67
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000068embryo stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000104life cycle
  • ZFS:0000019Gastrula:Shield
2.85e3
  • 2.85e3
  • 5.45e3
  • 6.13e3
  • 6.23e3
  • 9.34e3
  • 9.77e3
  • 1.00e4
  • 1.16e4
  • 1.41e4
  • 1.41e4
  • 1.46e4
  • 1.46e4
  • 1.50e4
  • 1.50e4
90.46
  • 90.46
  • 81.75
  • 79.47
  • 79.13
  • 68.74
  • 67.28
  • 66.40
  • 61.09
  • 52.72
  • 52.63
  • 51.27
  • 51.26
  • 49.92
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
3.32e3
  • 3.32e3
  • 3.37e3
  • 4.26e3
88.88
  • 88.88
  • 88.72
  • 85.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
3.56e3
  • 3.56e3
  • 4.04e3
  • 6.23e3
  • 9.85e3
  • 9.95e3
  • 1.01e4
  • 1.06e4
  • 1.39e4
  • 1.58e4
88.08
  • 88.08
  • 86.47
  • 79.13
  • 67.01
  • 66.68
  • 66.27
  • 64.68
  • 53.42
  • 47.19
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.62e3
  • 4.62e3
84.54
  • 84.54
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.72e3
  • 4.72e3
84.18
  • 84.18
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.47e3
  • 5.47e3
81.68
  • 81.68
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.20e3
  • 8.20e3
72.54
  • 72.54
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.70e3
  • 8.70e3
70.89
  • 70.89
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
1.03e4
  • 1.03e4
65.51
  • 65.51
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.90
  • 63.90
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.25
  • 60.25
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.71
  • 58.71
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.06
  • 58.06
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.26e4
  • 1.26e4
  • 1.26e4
  • 1.28e4
  • 1.32e4
  • 1.32e4
  • 1.39e4
  • 1.39e4
57.87
  • 57.87
  • 57.68
  • 57.13
  • 55.86
  • 55.86
  • 53.55
  • 53.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.64
  • 57.64
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.03
  • 54.03
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.44e4
  • 1.44e4
  • 1.45e4
51.87
  • 51.87
  • 51.44
AEIR
  • AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
1.52e4
  • 1.52e4
49.17
  • 49.17
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.53e4
  • 1.53e4
  • 1.54e4
  • 1.75e4
48.73
  • 48.73
  • 48.33
  • 41.41
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.60e4
  • 1.60e4
46.51
  • 46.51
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
45.94
  • 45.94
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.62e4
  • 1.62e4
45.61
  • 45.61
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
43.68
  • 43.68
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
41.06
  • 41.06
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.76
  • 40.76
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eumetazoa2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000037932.

Cross-references

EnsemblENSDARG00000037932 (lin7b)
ZFINZDB-GENE-041011-1 (lin7b)
EMBLBX324157
Uniprot/SPTREMBLF1QBB5, F1QBB5_DANRE, F1RDK3, F1RDK3_DANRE

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