D. rerio Gene: tnnt1 - ENSDARG00000037954 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000037954
Nametnnt1
Descriptiontroponin T type 1 (skeletal, slow) [Source:ZFIN;Acc:ZDB-GENE-080723-27]
OrganismDanio rerio (zebrafish)
Synonym(s)loc558627, zgc:193831, zgc:193865

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.05e3
  • 1.05e3
96.50
  • 96.50
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.32e3
  • 1.32e3
  • 9.96e3
95.58
  • 95.58
  • 66.67
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.93e3
  • 1.93e3
  • 4.88e3
93.54
  • 93.54
  • 83.65
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
4.20e3
  • 4.20e3
  • 1.29e4
85.93
  • 85.93
  • 56.67
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
4.23e3
  • 4.23e3
  • 1.17e4
  • 1.60e4
  • 1.69e4
  • 2.20e4
85.83
  • 85.83
  • 60.91
  • 46.55
  • 43.57
  • 26.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.73e3
  • 4.73e3
84.18
  • 84.18
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
6.33e3
  • 6.33e3
  • 1.49e4
78.79
  • 78.79
  • 49.94
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
7.41e3
  • 7.41e3
75.19
  • 75.19
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
8.27e3
  • 8.27e3
72.29
  • 72.29
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.68e3
  • 8.68e3
70.94
  • 70.94
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
8.91e3
  • 8.91e3
70.16
  • 70.16
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.01e4
  • 1.01e4
  • 1.19e4
66.32
  • 66.32
  • 60.10
AEIR
  • AEIR
  • AEIR
CL:0000189slow muscle cell
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
62.49
  • 62.49
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.29
  • 60.29
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.93
  • 58.93
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.01
  • 53.01
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.43e4
  • 1.43e4
52.13
  • 52.13
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.94
  • 49.94
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.49
  • 45.49
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.93e4
  • 1.93e4
35.52
  • 35.52
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

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