D. rerio Gene: rcn3 - ENSDARG00000037961 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000037961
Namercn3
Descriptionreticulocalbin 3, EF-hand calcium binding domain [Source:ZFIN;Acc:ZDB-GENE-040625-175]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fb37d05, zgc:86646
Orthologs(s)9 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
733
  • 733
  • 1.09e4
97.55
  • 97.55
  • 63.40
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.13e3
  • 1.13e3
96.23
  • 96.23
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
1.14e3
  • 1.14e3
  • 1.65e3
  • 1.91e3
  • 2.01e3
  • 2.21e3
  • 2.22e3
  • 3.80e3
  • 4.86e3
  • 7.60e3
  • 8.77e3
96.19
  • 96.19
  • 94.49
  • 93.62
  • 93.27
  • 92.60
  • 92.58
  • 87.29
  • 83.73
  • 74.57
  • 70.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.54e3
  • 1.54e3
94.85
  • 94.85
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.73e3
  • 1.73e3
94.21
  • 94.21
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.68e3
  • 2.68e3
91.04
  • 91.04
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
2.84e3
  • 2.84e3
  • 1.20e4
90.48
  • 90.48
  • 59.89
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
2.86e3
  • 2.86e3
  • 1.49e4
  • 1.57e4
90.43
  • 90.43
  • 49.94
  • 47.45
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.95e3
  • 2.95e3
90.12
  • 90.12
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000106zygote stage
  • UBERON:0000104life cycle
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
3.29e3
  • 3.29e3
  • 4.30e3
  • 4.71e3
  • 4.99e3
  • 6.64e3
  • 7.99e3
  • 9.63e3
  • 9.82e3
  • 1.01e4
  • 1.03e4
  • 1.11e4
  • 1.17e4
  • 1.20e4
  • 1.20e4
  • 1.31e4
  • 1.41e4
  • 1.49e4
88.98
  • 88.98
  • 85.61
  • 84.24
  • 83.30
  • 77.76
  • 73.26
  • 67.76
  • 67.11
  • 66.02
  • 65.41
  • 62.68
  • 60.94
  • 59.99
  • 59.81
  • 56.27
  • 52.89
  • 50.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.42e3
  • 3.42e3
88.55
  • 88.55
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
3.48e3
  • 3.48e3
  • 9.96e3
88.35
  • 88.35
  • 66.66
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.60e3
  • 3.60e3
87.96
  • 87.96
AEIR
  • AEIR
UBERON:0001637artery
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
3.73e3
  • 3.73e3
  • 3.73e3
  • 4.60e3
87.50
  • 87.50
  • 87.50
  • 84.61
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
4.13e3
  • 4.13e3
86.18
  • 86.18
AEIR
  • AEIR
UBERON:0003058hypochord
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
4.48e3
  • 4.48e3
  • 5.34e3
  • 5.75e3
  • 6.22e3
85.00
  • 85.00
  • 82.14
  • 80.76
  • 79.16
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.55e3
  • 4.55e3
84.78
  • 84.78
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.63e3
  • 4.63e3
84.49
  • 84.49
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.80e3
  • 4.80e3
83.94
  • 83.94
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
4.91e3
  • 4.91e3
  • 5.90e3
  • 6.77e3
83.55
  • 83.55
  • 80.24
  • 77.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004741cleithrum
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
4.98e3
  • 4.98e3
  • 5.43e3
83.33
  • 83.33
  • 81.81
AEIR
  • AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
4.98e3
  • 4.98e3
  • 5.60e3
83.33
  • 83.33
  • 81.24
AEIR
  • AEIR
  • AEIR
UBERON:0008895splanchnocranium
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
5.60e3
  • 5.60e3
  • 5.60e3
81.25
  • 81.25
  • 81.25
AEIR
  • AEIR
  • AEIR
UBERON:0003079floor plate
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
5.98e3
  • 5.98e3
  • 6.22e3
  • 6.54e3
  • 6.89e3
79.99
  • 79.99
  • 79.16
  • 78.12
  • 76.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.09e3
  • 6.09e3
79.62
  • 79.62
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
6.54e3
  • 6.54e3
  • 7.03e3
  • 7.77e3
  • 8.22e3
  • 9.19e3
  • 9.96e3
  • 1.20e4
  • 1.22e4
  • 1.22e4
78.12
  • 78.12
  • 76.46
  • 73.98
  • 72.48
  • 69.22
  • 66.66
  • 59.98
  • 59.06
  • 59.06
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.69e3
  • 6.69e3
77.59
  • 77.59
AEIR
  • AEIR
UBERON:0001003skin epidermis
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
6.72e3
  • 6.72e3
  • 6.72e3
  • 7.12e3
77.49
  • 77.49
  • 77.49
  • 76.18
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
6.72e3
  • 6.72e3
  • 6.72e3
  • 7.47e3
  • 1.07e4
77.49
  • 77.49
  • 77.49
  • 74.98
  • 64.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
6.85e3
  • 6.85e3
  • 7.45e3
  • 9.24e3
  • 9.38e3
  • 1.03e4
77.06
  • 77.06
  • 75.04
  • 69.08
  • 68.59
  • 65.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005253head mesenchyme
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
6.97e3
  • 6.97e3
  • 6.97e3
  • 6.97e3
  • 1.20e4
  • 1.28e4
76.66
  • 76.66
  • 76.66
  • 76.66
  • 59.98
  • 57.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.17e3
  • 7.17e3
76.01
  • 76.01
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
7.33e3
  • 7.33e3
  • 9.38e3
  • 1.02e4
  • 1.07e4
  • 1.18e4
75.44
  • 75.44
  • 68.60
  • 65.70
  • 64.18
  • 60.58
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
7.58e3
  • 7.58e3
74.62
  • 74.62
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
8.29e3
  • 8.29e3
72.25
  • 72.25
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
8.96e3
  • 8.96e3
  • 1.52e4
70.00
  • 70.00
  • 49.09
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
9.63e3
  • 9.63e3
67.74
  • 67.74
AEIR
  • AEIR
UBERON:0004880chordamesoderm
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
9.96e3
  • 9.96e3
  • 1.03e4
  • 1.03e4
  • 1.09e4
  • 1.09e4
  • 1.09e4
66.66
  • 66.66
  • 65.37
  • 65.37
  • 63.63
  • 63.63
  • 63.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.01e4
  • 1.01e4
66.34
  • 66.34
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.94
  • 62.94
AEIR
  • AEIR
UBERON:0000926mesoderm
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.20e4
  • 1.20e4
  • 1.20e4
  • 1.20e4
59.98
  • 59.98
  • 59.98
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.68
  • 52.68
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000037961.

Cross-references

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