D. rerio Gene: srrm2 - ENSDARG00000037965 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000037965
Namesrrm2
Descriptionserine/arginine repetitive matrix 2 [Source:ZFIN;Acc:ZDB-GENE-050522-399]
OrganismDanio rerio (zebrafish)
Synonym(s)f1qup6, zgc:110023

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
1.48e3
  • 1.48e3
  • 1.75e3
  • 1.79e3
  • 1.83e3
  • 1.98e3
  • 2.27e3
95.06
  • 95.06
  • 94.13
  • 94.00
  • 93.86
  • 93.39
  • 92.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
1.74e3
  • 1.74e3
  • 1.94e3
  • 2.19e3
  • 2.65e3
  • 3.48e3
94.17
  • 94.17
  • 93.50
  • 92.67
  • 91.12
  • 88.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • UBERON:0000106zygote stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000036Larval:Day 4
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • UBERON:0000104life cycle
  • ZFS:0000049segmentation
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
1.77e3
  • 1.77e3
  • 1.83e3
  • 1.84e3
  • 2.30e3
  • 3.43e3
  • 3.89e3
  • 4.95e3
  • 4.98e3
  • 5.68e3
  • 6.24e3
  • 6.54e3
  • 6.64e3
  • 6.67e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.95e3
  • 6.97e3
  • 7.03e3
  • 7.19e3
  • 7.47e3
  • 7.47e3
  • 7.63e3
  • 7.91e3
  • 8.33e3
  • 8.96e3
  • 8.96e3
  • 1.35e4
  • 1.45e4
  • 1.48e4
  • 1.49e4
94.07
  • 94.07
  • 93.89
  • 93.84
  • 92.29
  • 88.52
  • 86.98
  • 83.42
  • 83.33
  • 80.99
  • 79.10
  • 78.12
  • 77.77
  • 77.67
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.72
  • 76.66
  • 76.46
  • 75.93
  • 74.99
  • 74.99
  • 74.46
  • 73.52
  • 72.12
  • 69.99
  • 69.99
  • 54.83
  • 51.51
  • 50.61
  • 50.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.98e3
  • 1.98e3
93.38
  • 93.38
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.00e3
  • 2.00e3
93.30
  • 93.30
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
2.08e3
  • 2.08e3
  • 3.99e3
  • 4.61e3
  • 4.68e3
93.05
  • 93.05
  • 86.64
  • 84.58
  • 84.35
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.11e3
  • 2.11e3
92.94
  • 92.94
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
2.27e3
  • 2.27e3
  • 2.55e3
  • 2.89e3
  • 2.94e3
  • 3.29e3
  • 3.65e3
  • 4.00e3
  • 5.45e3
  • 5.59e3
  • 6.19e3
92.42
  • 92.42
  • 91.47
  • 90.32
  • 90.15
  • 88.98
  • 87.79
  • 86.62
  • 81.75
  • 81.30
  • 79.29
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
2.41e3
  • 2.41e3
91.93
  • 91.93
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
3.00e3
  • 3.00e3
89.96
  • 89.96
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
3.70e3
  • 3.70e3
87.62
  • 87.62
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.77e3
  • 3.77e3
87.37
  • 87.37
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.89e3
  • 3.89e3
86.99
  • 86.99
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.90e3
  • 3.90e3
86.95
  • 86.95
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.13e3
  • 4.13e3
  • 4.71e3
86.16
  • 86.16
  • 84.25
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.27e3
  • 4.27e3
  • 6.12e3
85.71
  • 85.71
  • 79.50
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.27e3
  • 4.27e3
85.70
  • 85.70
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.31e3
  • 4.31e3
85.56
  • 85.56
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.40e3
  • 4.40e3
85.28
  • 85.28
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
4.40e3
  • 4.40e3
85.26
  • 85.26
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
4.67e3
  • 4.67e3
84.37
  • 84.37
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
4.69e3
  • 4.69e3
84.28
  • 84.28
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.78e3
  • 4.78e3
83.99
  • 83.99
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.90e3
  • 4.90e3
83.59
  • 83.59
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
5.12e3
  • 5.12e3
  • 5.45e3
82.85
  • 82.85
  • 81.74
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
5.29e3
  • 5.29e3
  • 5.31e3
82.29
  • 82.29
  • 82.21
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.34e3
  • 5.34e3
82.12
  • 82.12
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.09e3
  • 6.09e3
79.63
  • 79.63
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
6.09e3
  • 6.09e3
  • 7.22e3
  • 7.40e3
79.60
  • 79.60
  • 75.82
  • 75.24
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
6.36e3
  • 6.36e3
78.70
  • 78.70
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.43e3
  • 7.43e3
75.12
  • 75.12
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.98e3
  • 7.98e3
73.27
  • 73.27
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.27e3
  • 8.27e3
72.31
  • 72.31
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.30e4
  • 1.30e4
56.48
  • 56.48
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBX571714, CU459155
EnsemblENSDARG00000037965 (srrm2)
Uniprot/SPTREMBLF1QLP6, F1QLP6_DANRE
ZFINZDB-GENE-050522-399 (srrm2)

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