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D. rerio Gene: gdf3 - ENSDARG00000037995 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000037995
Namegdf3
Descriptiongrowth differentiation factor 3 [Source:ZFIN;Acc:ZDB-GENE-980526-389]
OrganismDanio rerio (zebrafish)
Synonym(s)cb556, dvr-1, dvr1, vg1, zdvr-1, zdvr1, zgc:103542

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
90.0
  • 90.0
  • 246
  • 281
  • 297
  • 478
99.70
  • 99.70
  • 99.18
  • 99.06
  • 99.01
  • 98.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
162
  • 162
99.46
  • 99.46
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
188
  • 188
  • 1.19e4
99.38
  • 99.38
  • 60.21
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
217
  • 217
99.28
  • 99.28
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
229
  • 229
99.24
  • 99.24
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000068embryo stage
  • UBERON:00072334 cell stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000109gastrula stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • UBERON:0000104life cycle
  • ZFS:0000033Hatching:Long-pec
264
  • 264
  • 1.40e3
  • 6.23e3
  • 6.65e3
  • 6.79e3
  • 7.91e3
  • 9.00e3
  • 9.39e3
  • 1.01e4
  • 1.09e4
  • 1.19e4
  • 1.22e4
  • 1.37e4
  • 1.41e4
  • 1.44e4
  • 1.45e4
  • 1.50e4
  • 1.50e4
99.12
  • 99.12
  • 95.31
  • 79.14
  • 77.73
  • 77.27
  • 73.52
  • 69.87
  • 68.57
  • 66.06
  • 63.62
  • 60.00
  • 58.99
  • 54.18
  • 52.62
  • 51.81
  • 51.33
  • 49.92
  • 49.89
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
424
  • 424
98.58
  • 98.58
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
607
  • 607
97.97
  • 97.97
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
839
  • 839
97.19
  • 97.19
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
952
  • 952
  • 1.22e3
  • 4.28e3
  • 6.82e3
  • 7.69e3
  • 8.23e3
96.82
  • 96.82
  • 95.93
  • 85.68
  • 77.18
  • 74.24
  • 72.45
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.02e3
  • 1.02e3
96.60
  • 96.60
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.08e3
  • 1.08e3
96.40
  • 96.40
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.21e3
  • 2.21e3
92.62
  • 92.62
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.21e3
  • 2.21e3
92.59
  • 92.59
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000104life cycle
3.98e3
  • 3.98e3
  • 3.98e3
  • 4.27e3
  • 4.98e3
  • 1.14e4
  • 1.20e4
  • 1.23e4
  • 1.25e4
  • 1.25e4
  • 1.43e4
86.66
  • 86.66
  • 86.66
  • 85.71
  • 83.33
  • 61.88
  • 59.98
  • 58.80
  • 58.31
  • 58.31
  • 52.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
4.66e3
  • 4.66e3
  • 1.79e4
84.39
  • 84.39
  • 40.15
AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
5.41e3
  • 5.41e3
81.89
  • 81.89
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
6.71e3
  • 6.71e3
  • 8.74e3
  • 1.02e4
  • 1.06e4
  • 1.29e4
  • 1.42e4
  • 1.51e4
  • 1.81e4
77.54
  • 77.54
  • 70.72
  • 65.81
  • 64.38
  • 56.80
  • 52.32
  • 49.30
  • 39.34
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
6.95e3
  • 6.95e3
76.73
  • 76.73
AEIR
  • AEIR
UBERON:2000083ventral mesoderm
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
6.97e3
  • 6.97e3
  • 7.97e3
  • 8.54e3
76.66
  • 76.66
  • 73.32
  • 71.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000022Gastrula:Bud
7.08e3
  • 7.08e3
  • 8.30e3
  • 9.13e3
  • 9.13e3
  • 1.28e4
76.30
  • 76.30
  • 72.21
  • 69.43
  • 69.43
  • 57.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
7.17e3
  • 7.17e3
  • 8.34e3
75.98
  • 75.98
  • 72.07
AEIR
  • AEIR
  • AEIR
UBERON:0003081lateral plate mesoderm
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000023Segmentation:1-4 somites
7.47e3
  • 7.47e3
  • 9.96e3
75.00
  • 75.00
  • 66.66
AEIR
  • AEIR
  • AEIR
UBERON:0003084heart primordium
  • ZFS:0000026Segmentation:14-19 somites
7.91e3
  • 7.91e3
73.52
  • 73.52
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.57
  • 64.57
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.12e4
  • 1.12e4
  • 1.31e4
  • 1.51e4
62.50
  • 62.50
  • 56.02
  • 49.58
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.63
  • 60.63
AEIR
  • AEIR
UBERON:0000926mesoderm
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.20e4
  • 1.20e4
  • 1.20e4
  • 1.21e4
59.98
  • 59.98
  • 59.98
  • 59.36
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.71
  • 59.71
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.32e4
  • 1.32e4
55.79
  • 55.79
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.36e4
  • 1.36e4
54.45
  • 54.45
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000026Segmentation:14-19 somites
1.39e4
  • 1.39e4
53.41
  • 53.41
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.42e4
  • 1.42e4
52.55
  • 52.55
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.55e4
  • 1.55e4
  • 1.80e4
48.07
  • 48.07
  • 39.59
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.63e4
  • 1.63e4
  • 1.75e4
45.39
  • 45.39
  • 41.25
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.14
  • 45.14
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
36.61
  • 36.61
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EnsemblENSDARG00000037995 (gdf3)
ZFINZDB-GENE-980526-389 (gdf3)
EMBLFP101972, U00931
Uniprot/SPTREMBLK7DY39, K7DY39_DANRE, K7DYL7, K7DYL7_DANRE
Uniprot/SWISSPROTDVR1_DANRE, P35621

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