D. rerio Gene: smurf2 - ENSDARG00000038067 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000038067
Namesmurf2
DescriptionSMAD specific E3 ubiquitin protein ligase 2 [Source:ZFIN;Acc:ZDB-GENE-030131-1830]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fb82a11, wu:fc41c02

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • UBERON:0000106zygote stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000104life cycle
3.96e3
  • 3.96e3
  • 4.59e3
  • 4.60e3
  • 4.78e3
  • 4.86e3
  • 5.18e3
  • 5.25e3
  • 5.48e3
  • 5.91e3
  • 5.98e3
  • 6.17e3
  • 6.19e3
  • 6.89e3
  • 7.13e3
  • 1.47e4
86.73
  • 86.73
  • 84.63
  • 84.59
  • 83.99
  • 83.74
  • 82.65
  • 82.41
  • 81.67
  • 80.21
  • 79.97
  • 79.34
  • 79.27
  • 76.92
  • 76.12
  • 50.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
4.32e3
  • 4.32e3
85.55
  • 85.55
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
4.42e3
  • 4.42e3
  • 4.44e3
  • 6.54e3
  • 1.05e4
  • 1.06e4
85.20
  • 85.20
  • 85.15
  • 78.11
  • 64.96
  • 64.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
4.74e3
  • 4.74e3
  • 5.29e3
  • 5.74e3
  • 7.23e3
  • 7.40e3
  • 7.70e3
84.12
  • 84.12
  • 82.29
  • 80.79
  • 75.80
  • 75.23
  • 74.21
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.80e3
  • 4.80e3
83.92
  • 83.92
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.92e3
  • 4.92e3
83.53
  • 83.53
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
4.99e3
  • 4.99e3
  • 6.60e3
83.30
  • 83.30
  • 77.90
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
5.09e3
  • 5.09e3
82.97
  • 82.97
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.18e3
  • 5.18e3
82.67
  • 82.67
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
5.20e3
  • 5.20e3
  • 6.06e3
  • 6.07e3
  • 1.03e4
82.58
  • 82.58
  • 79.70
  • 79.67
  • 65.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.38e3
  • 5.38e3
82.00
  • 82.00
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
5.66e3
  • 5.66e3
  • 6.63e3
  • 6.69e3
  • 7.06e3
  • 7.43e3
  • 7.77e3
  • 7.78e3
  • 8.15e3
  • 8.84e3
  • 9.94e3
81.05
  • 81.05
  • 77.79
  • 77.60
  • 76.37
  • 75.12
  • 73.98
  • 73.94
  • 72.70
  • 70.40
  • 66.71
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
6.57e3
  • 6.57e3
77.99
  • 77.99
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
6.62e3
  • 6.62e3
  • 7.53e3
77.83
  • 77.83
  • 74.80
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
7.18e3
  • 7.18e3
75.98
  • 75.98
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
7.43e3
  • 7.43e3
  • 7.79e3
75.12
  • 75.12
  • 73.93
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
7.45e3
  • 7.45e3
  • 8.50e3
  • 1.06e4
75.05
  • 75.05
  • 71.55
  • 64.40
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.80e3
  • 7.80e3
73.88
  • 73.88
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.28e3
  • 8.28e3
72.27
  • 72.27
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
8.44e3
  • 8.44e3
71.73
  • 71.73
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.67e3
  • 8.67e3
70.96
  • 70.96
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
8.77e3
  • 8.77e3
70.64
  • 70.64
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
9.38e3
  • 9.38e3
68.59
  • 68.59
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.85e3
  • 9.85e3
67.03
  • 67.03
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.93e3
  • 9.93e3
66.74
  • 66.74
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
66.41
  • 66.41
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.22
  • 66.22
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
66.15
  • 66.15
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.27
  • 65.27
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.87
  • 62.87
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

EMBLBC155849
EnsemblENSDARG00000038067 (smurf2)
Uniprot/SWISSPROTA9JRZ0, SMUF2_DANRE
ZFINZDB-GENE-030131-1830 (smurf2)

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