D. rerio Gene: ptx4 - ENSDARG00000038072 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000038072
Nameptx4
Descriptionpentraxin 4, long [Source:ZFIN;Acc:ZDB-GENE-120215-70]
OrganismDanio rerio (zebrafish)
Synonym(s)fb77c07, si:ch211-157c3.5, wu:fb77c07

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.65e3
  • 7.65e3
74.39
  • 74.39
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
8.87e3
  • 8.87e3
70.29
  • 70.29
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
1.06e4
  • 1.06e4
  • 1.59e4
  • 1.66e4
  • 1.78e4
  • 1.79e4
  • 1.83e4
64.47
  • 64.47
  • 46.73
  • 44.36
  • 40.56
  • 40.18
  • 38.62
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
1.09e4
  • 1.09e4
  • 1.11e4
  • 1.12e4
  • 1.22e4
  • 1.27e4
63.50
  • 63.50
  • 62.79
  • 62.62
  • 59.12
  • 57.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.16e4
  • 1.16e4
61.02
  • 61.02
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
1.24e4
  • 1.24e4
  • 1.26e4
  • 1.47e4
58.63
  • 58.63
  • 57.94
  • 50.73
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.01
  • 56.01
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.01
  • 55.01
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.45
  • 53.45
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
1.41e4
  • 1.41e4
  • 2.03e4
  • 2.04e4
  • 2.44e4
52.64
  • 52.64
  • 32.08
  • 31.70
  • 18.21
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.44e4
  • 1.44e4
51.95
  • 51.95
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.51e4
  • 1.51e4
49.49
  • 49.49
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.19
  • 46.19
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.18
  • 43.18
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
42.98
  • 42.98
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.79
  • 40.79
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.82e4
  • 1.82e4
39.21
  • 39.21
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.99e4
  • 1.99e4
33.31
  • 33.31
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.07e4
  • 2.07e4
30.67
  • 30.67
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.19e4
  • 2.19e4
26.83
  • 26.83
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
2.32e4
  • 2.32e4
22.35
  • 22.35
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLCR394572
EnsemblENSDARG00000038072 (ptx4)
Uniprot/SPTREMBLF1RAX6, F1RAX6_DANRE
ZFINZDB-GENE-120215-70 (ptx4)

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