D. rerio Gene: her2 - ENSDARG00000038205 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000038205
Nameher2
Descriptionhairy-related 2 [Source:ZFIN;Acc:ZDB-GENE-980526-274]
OrganismDanio rerio (zebrafish)
Synonym(s)her-2, hes5a

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
1.38e3
  • 1.38e3
  • 1.89e3
  • 3.42e3
  • 5.42e3
  • 5.76e3
  • 6.21e3
  • 6.38e3
  • 9.75e3
  • 1.06e4
  • 1.08e4
95.38
  • 95.38
  • 93.67
  • 88.54
  • 81.85
  • 80.73
  • 79.22
  • 78.64
  • 67.36
  • 64.55
  • 63.96
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.20e3
  • 2.20e3
92.63
  • 92.63
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000042Juvenile:Days 30-44
3.25e3
  • 3.25e3
  • 3.30e3
  • 5.03e3
  • 5.42e3
  • 9.68e3
  • 9.95e3
  • 1.05e4
  • 1.05e4
  • 1.09e4
  • 1.20e4
  • 1.29e4
  • 1.37e4
89.11
  • 89.11
  • 88.97
  • 83.16
  • 81.85
  • 67.61
  • 66.69
  • 64.96
  • 64.76
  • 63.61
  • 59.69
  • 56.97
  • 54.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
3.29e3
  • 3.29e3
  • 2.11e4
88.97
  • 88.97
  • 29.44
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
5.82e3
  • 5.82e3
  • 1.28e4
  • 1.31e4
  • 1.32e4
  • 1.32e4
  • 1.75e4
80.50
  • 80.50
  • 57.27
  • 56.17
  • 55.69
  • 55.67
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
5.93e3
  • 5.93e3
80.13
  • 80.13
AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
6.23e3
  • 6.23e3
  • 1.34e4
79.15
  • 79.15
  • 55.24
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
6.72e3
  • 6.72e3
77.50
  • 77.50
AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000029Pharyngula:Prim-5
6.79e3
  • 6.79e3
77.27
  • 77.27
AEIR
  • AEIR
UBERON:2007030posterior neural rod
  • ZFS:0000024Segmentation:5-9 somites
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
7.47e3
  • 7.47e3
  • 1.34e4
  • 1.42e4
74.98
  • 74.98
  • 54.97
  • 52.47
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
  • 1.34e4
74.98
  • 74.98
  • 55.24
AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
8.22e3
  • 8.22e3
  • 1.28e4
72.48
  • 72.48
  • 57.12
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
8.32e3
  • 8.32e3
  • 1.19e4
  • 1.35e4
  • 1.36e4
72.16
  • 72.16
  • 60.00
  • 54.73
  • 54.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
8.73e3
  • 8.73e3
  • 1.67e4
70.77
  • 70.77
  • 44.12
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
9.23e3
  • 9.23e3
  • 1.11e4
  • 1.54e4
69.09
  • 69.09
  • 62.92
  • 48.58
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
9.75e3
  • 9.75e3
  • 1.48e4
  • 1.65e4
67.34
  • 67.34
  • 50.41
  • 44.78
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
9.76e3
  • 9.76e3
67.33
  • 67.33
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
9.94e3
  • 9.94e3
66.72
  • 66.72
AEIR
  • AEIR
UBERON:0002346neurectoderm
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
9.96e3
  • 9.96e3
  • 9.96e3
  • 1.12e4
66.66
  • 66.66
  • 66.66
  • 62.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.58
  • 62.58
AEIR
  • AEIR
UBERON:0001897dorsal plus ventral thalamus
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
1.17e4
  • 1.17e4
  • 1.25e4
60.70
  • 60.70
  • 58.31
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.00
  • 60.00
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.12
  • 59.12
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.22
  • 56.22
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
1.34e4
  • 1.34e4
55.24
  • 55.24
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.35e4
  • 1.35e4
54.82
  • 54.82
AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000027Segmentation:20-25 somites
1.39e4
  • 1.39e4
53.31
  • 53.31
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.41e4
  • 1.41e4
52.79
  • 52.79
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.92
  • 50.92
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
50.06
  • 50.06
AEIR
  • AEIR
CL:0000031neuroblast
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000020Gastrula:75%-epiboly
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000204ventral part of telencephalon
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000203pallium
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0003065ciliary marginal zone
  • ZFS:0000043Juvenile:Days 45-89
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0007135neural keel
  • ZFS:0000023Segmentation:1-4 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2007036hindbrain neural rod
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2007042spinal cord neural tube
  • ZFS:0000026Segmentation:14-19 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:2007045midbrain hindbrain boundary neural keel
  • ZFS:0000023Segmentation:1-4 somites
1.49e4
  • 1.49e4
49.98
  • 49.98
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.09
  • 45.09
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.16
  • 44.16
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
43.98
  • 43.98
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.77
  • 40.77
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.84e4
  • 1.84e4
38.29
  • 38.29
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
31.97
  • 31.97
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.28e4
  • 2.28e4
23.58
  • 23.58
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLCU633737
EnsemblENSDARG00000038205 (her2)
Uniprot/SPTREMBLF6PBN7, F6PBN7_DANRE
ZFINZDB-GENE-980526-274 (her2)

Do not show this banner again