D. rerio Gene: tsc22d1 - ENSDARG00000038306 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000038306
Nametsc22d1
DescriptionTSC22 domain family, member 1 [Source:ZFIN;Acc:ZDB-GENE-030131-7785]
OrganismDanio rerio (zebrafish)
Synonym(s)fj34d05, wu:fj34d05, zgc:65869, zgc:85857
Orthologs(s)24 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
363
  • 363
  • 1.02e4
  • 1.05e4
98.79
  • 98.79
  • 65.89
  • 64.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
380
  • 380
  • 9.33e3
  • 9.51e3
98.73
  • 98.73
  • 68.74
  • 68.17
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
405
  • 405
  • 1.54e3
98.65
  • 98.65
  • 94.86
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
461
  • 461
  • 1.13e3
98.46
  • 98.46
  • 96.22
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
626
  • 626
97.91
  • 97.91
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
887
  • 887
  • 2.03e3
97.03
  • 97.03
  • 93.21
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
945
  • 945
  • 951
  • 2.70e3
  • 2.95e3
  • 3.01e3
96.84
  • 96.84
  • 96.82
  • 90.97
  • 90.11
  • 89.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.23e3
  • 1.23e3
95.87
  • 95.87
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.34e3
  • 1.34e3
95.53
  • 95.53
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.37e3
  • 1.37e3
95.43
  • 95.43
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.46e3
  • 1.46e3
95.11
  • 95.11
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.53e3
  • 1.53e3
94.89
  • 94.89
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.63e3
  • 1.63e3
94.54
  • 94.54
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.91e3
  • 1.91e3
93.60
  • 93.60
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.93e3
  • 1.93e3
93.55
  • 93.55
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.15e3
  • 2.15e3
92.79
  • 92.79
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.16e3
  • 2.16e3
92.77
  • 92.77
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.55e3
  • 2.55e3
91.45
  • 91.45
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
2.92e3
  • 2.92e3
  • 3.04e3
90.22
  • 90.22
  • 89.83
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.00e3
  • 3.00e3
89.95
  • 89.95
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.04e3
  • 3.04e3
89.82
  • 89.82
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
3.14e3
  • 3.14e3
  • 3.80e3
89.49
  • 89.49
  • 87.29
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.47e3
  • 3.47e3
88.38
  • 88.38
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.57e3
  • 3.57e3
88.04
  • 88.04
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.49e3
  • 4.49e3
84.96
  • 84.96
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.34e3
  • 5.34e3
82.11
  • 82.11
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
5.43e3
  • 5.43e3
  • 9.13e3
  • 9.67e3
  • 9.96e3
  • 9.96e3
  • 1.05e4
81.81
  • 81.81
  • 69.43
  • 67.63
  • 66.65
  • 66.65
  • 64.69
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
6.54e3
  • 6.54e3
  • 6.54e3
  • 6.64e3
  • 8.22e3
  • 8.22e3
  • 8.65e3
  • 1.32e4
  • 1.40e4
78.12
  • 78.12
  • 78.12
  • 77.77
  • 72.48
  • 72.48
  • 71.04
  • 55.86
  • 53.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000026Segmentation:14-19 somites
6.89e3
  • 6.89e3
76.92
  • 76.92
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
  • 7.86e3
  • 7.91e3
  • 7.91e3
  • 7.97e3
  • 1.26e4
  • 1.28e4
74.99
  • 74.99
  • 73.67
  • 73.52
  • 73.52
  • 73.32
  • 57.68
  • 57.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
7.86e3
  • 7.86e3
  • 8.22e3
  • 1.28e4
  • 1.29e4
73.67
  • 73.67
  • 72.48
  • 57.13
  • 56.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000319mucus secreting cell
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
8.30e3
  • 8.30e3
  • 8.96e3
72.22
  • 72.22
  • 69.99
AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
8.37e3
  • 8.37e3
  • 8.96e3
  • 9.34e3
  • 9.51e3
  • 9.51e3
  • 9.67e3
  • 1.05e4
71.98
  • 71.98
  • 69.98
  • 68.74
  • 68.16
  • 68.16
  • 67.63
  • 64.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
9.60e3
  • 9.60e3
  • 9.60e3
67.85
  • 67.85
  • 67.85
AEIR
  • AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
9.67e3
  • 9.67e3
  • 9.67e3
67.63
  • 67.63
  • 67.63
AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
1.02e4
  • 1.02e4
  • 1.06e4
  • 1.08e4
65.77
  • 65.77
  • 64.56
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
1.06e4
  • 1.06e4
  • 1.10e4
  • 1.10e4
64.56
  • 64.56
  • 63.14
  • 63.02
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005721pronephric mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
1.12e4
  • 1.12e4
  • 1.16e4
  • 1.16e4
62.49
  • 62.49
  • 61.10
  • 61.10
AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000023forerunner cell group (Danio)
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
1.21e4
  • 1.21e4
  • 1.26e4
  • 1.26e4
  • 1.28e4
  • 1.36e4
  • 1.36e4
59.36
  • 59.36
  • 57.68
  • 57.68
  • 57.13
  • 54.53
  • 54.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSDARG00000038306.

Cross-references

EnsemblENSDARG00000038306 (tsc22d1)
ZFINZDB-GENE-030131-7785 (tsc22d1)
EMBLBC056321, BC067662, CR847884
Uniprot/SPTREMBLB0V1G3, B0V1G3_DANRE, F1Q9K8, F1Q9K8_DANRE, F1R1Z6, F1R1Z6_DANRE, Q7SZP1, Q7SZP1_DANRE, X1WBE3, X1WBE3_DANRE

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