D. rerio Gene: rcl1 - ENSDARG00000038312 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000038312
Namercl1
DescriptionRNA terminal phosphate cyclase-like 1 [Source:ZFIN;Acc:ZDB-GENE-040930-11]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:109921
Orthologs(s)26 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.42e3
  • 1.42e3
95.26
  • 95.26
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.45e3
  • 1.45e3
95.16
  • 95.16
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
1.70e3
  • 1.70e3
  • 2.21e3
  • 3.68e3
  • 4.58e3
  • 5.23e3
  • 5.37e3
94.31
  • 94.31
  • 92.59
  • 87.67
  • 84.68
  • 82.48
  • 82.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.86e3
  • 1.86e3
93.79
  • 93.79
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.96e3
  • 1.96e3
  • 1.45e4
93.42
  • 93.42
  • 51.36
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.02e3
  • 2.02e3
93.23
  • 93.23
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
2.05e3
  • 2.05e3
  • 2.72e3
  • 4.28e3
  • 7.23e3
  • 7.72e3
93.14
  • 93.14
  • 90.91
  • 85.69
  • 75.79
  • 74.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
2.11e3
  • 2.11e3
  • 1.31e4
  • 1.35e4
92.94
  • 92.94
  • 56.23
  • 54.73
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.34e3
  • 2.34e3
92.16
  • 92.16
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.63e3
  • 2.63e3
91.19
  • 91.19
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.65e3
  • 2.65e3
91.12
  • 91.12
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
2.68e3
  • 2.68e3
  • 2.73e3
  • 3.04e3
  • 3.17e3
  • 3.42e3
  • 3.43e3
  • 5.14e3
  • 6.12e3
  • 8.31e3
  • 1.04e4
91.04
  • 91.04
  • 90.87
  • 89.84
  • 89.39
  • 88.54
  • 88.51
  • 82.79
  • 79.49
  • 72.18
  • 65.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.13e3
  • 3.13e3
89.52
  • 89.52
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000106zygote stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
3.25e3
  • 3.25e3
  • 3.49e3
  • 3.55e3
  • 3.78e3
  • 3.85e3
  • 3.89e3
  • 6.25e3
  • 6.99e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 7.98e3
  • 8.46e3
  • 8.79e3
  • 9.68e3
  • 1.06e4
  • 1.13e4
  • 1.26e4
  • 1.40e4
  • 1.47e4
  • 1.49e4
89.11
  • 89.11
  • 88.31
  • 88.11
  • 87.35
  • 87.09
  • 86.98
  • 79.09
  • 76.60
  • 74.99
  • 74.99
  • 73.52
  • 73.28
  • 71.68
  • 70.57
  • 67.57
  • 64.61
  • 62.17
  • 57.69
  • 53.03
  • 50.90
  • 50.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.67e3
  • 3.67e3
87.73
  • 87.73
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.89e3
  • 3.89e3
86.97
  • 86.97
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.47e3
  • 4.47e3
85.04
  • 85.04
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
4.48e3
  • 4.48e3
85.01
  • 85.01
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
4.53e3
  • 4.53e3
  • 7.08e3
84.85
  • 84.85
  • 76.30
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.59e3
  • 4.59e3
  • 6.35e3
84.63
  • 84.63
  • 78.74
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.88e3
  • 4.88e3
83.66
  • 83.66
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
5.36e3
  • 5.36e3
  • 7.09e3
  • 8.99e3
  • 1.30e4
  • 1.30e4
  • 1.34e4
82.05
  • 82.05
  • 76.26
  • 69.90
  • 56.64
  • 56.49
  • 54.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.40e3
  • 5.40e3
81.93
  • 81.93
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
5.47e3
  • 5.47e3
81.68
  • 81.68
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
5.49e3
  • 5.49e3
81.61
  • 81.61
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
5.51e3
  • 5.51e3
81.57
  • 81.57
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
5.90e3
  • 5.90e3
  • 1.44e4
80.23
  • 80.23
  • 51.84
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.45e3
  • 6.45e3
78.41
  • 78.41
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
7.52e3
  • 7.52e3
  • 7.98e3
  • 1.22e4
74.83
  • 74.83
  • 73.28
  • 59.18
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
8.42e3
  • 8.42e3
  • 9.02e3
71.80
  • 71.80
  • 69.81
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
  • 1.08e4
65.19
  • 65.19
  • 63.81
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.10
  • 64.10
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.62e4
  • 1.62e4
45.91
  • 45.91
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species19 genesCompare expression
Bilateria26 species26 genesCompare expression

Orthology information comes from OMA : ENSDARG00000038312.

Cross-references

EnsemblENSDARG00000038312 (rcl1)
ZFINZDB-GENE-040930-11 (rcl1)
EMBLCU929196
Uniprot/SPTREMBLF1RAI8, F1RAI8_DANRE

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