D. rerio Gene: zgc:172053 - ENSDARG00000038321 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000038321
Namezgc:172053
Descriptionzgc:172053 [Source:ZFIN;Acc:ZDB-GENE-080219-25]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-125e6.7
Paralog(s)12 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.42e3
  • 1.42e3
95.24
  • 95.24
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.49e3
  • 3.49e3
  • 2.31e4
88.31
  • 88.31
  • 22.78
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.91e3
  • 3.91e3
86.90
  • 86.90
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.11e3
  • 8.11e3
72.83
  • 72.83
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.10e3
  • 9.10e3
69.53
  • 69.53
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.89
  • 57.89
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.79
  • 57.79
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
57.57
  • 57.57
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.28e4
  • 1.28e4
  • 1.69e4
57.18
  • 57.18
  • 43.51
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
56.85
  • 56.85
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.38
  • 56.38
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
43.69
  • 43.69
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.76e4
  • 1.76e4
41.10
  • 41.10
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.89e4
  • 1.89e4
  • 2.49e4
36.68
  • 36.68
  • 16.65
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
1.99e4
  • 1.99e4
  • 2.01e4
  • 2.23e4
  • 2.46e4
33.30
  • 33.30
  • 32.82
  • 25.44
  • 17.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.14e4
  • 2.14e4
28.22
  • 28.22
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.38e4
  • 2.38e4
20.21
  • 20.21
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi11 genesCompare expression
Clupeocephala12 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000038321.

Cross-references

EnsemblENSDARG00000038321 (zgc:172053)
ZFINZDB-GENE-080219-25 (zgc:172053)
EMBLBC155587, BX511259
Uniprot/SPTREMBLA9JRA9, A9JRA9_DANRE

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