D. rerio Gene: csrnp1b - ENSDARG00000038429 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000038429
Namecsrnp1b
Descriptioncysteine-serine-rich nuclear protein 1b [Source:ZFIN;Acc:ZDB-GENE-030131-1515]
OrganismDanio rerio (zebrafish)
Synonym(s)axud1, csrnp1l, csrnpl, draxud1, fb73e11, wu:fb73e11, zgc:66340

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
494
  • 494
98.35
  • 98.35
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000022Gastrula:Bud
1.06e3
  • 1.06e3
  • 7.13e3
  • 9.96e3
96.46
  • 96.46
  • 76.14
  • 66.67
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.13e3
  • 1.13e3
96.21
  • 96.21
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.27e3
  • 1.27e3
95.74
  • 95.74
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.37e3
  • 1.37e3
  • 3.21e3
95.43
  • 95.43
  • 89.25
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.42e3
  • 1.42e3
95.25
  • 95.25
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
1.51e3
  • 1.51e3
  • 5.91e3
  • 1.42e4
94.95
  • 94.95
  • 80.20
  • 52.60
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.75e3
  • 1.75e3
  • 1.15e4
  • 1.20e4
94.15
  • 94.15
  • 61.34
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.82e3
  • 1.82e3
93.91
  • 93.91
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
2.27e3
  • 2.27e3
  • 2.67e3
  • 3.91e3
  • 4.91e3
  • 5.61e3
92.40
  • 92.40
  • 91.07
  • 86.92
  • 83.58
  • 81.21
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.36e3
  • 2.36e3
92.10
  • 92.10
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
2.65e3
  • 2.65e3
91.12
  • 91.12
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.75e3
  • 2.75e3
90.80
  • 90.80
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.85e3
  • 2.85e3
90.46
  • 90.46
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.89e3
  • 2.89e3
90.33
  • 90.33
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.23e3
  • 3.23e3
89.19
  • 89.19
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
3.81e3
  • 3.81e3
  • 5.69e3
87.24
  • 87.24
  • 80.96
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.94e3
  • 3.94e3
86.82
  • 86.82
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.02e3
  • 4.02e3
86.55
  • 86.55
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.11e3
  • 4.11e3
86.25
  • 86.25
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
4.22e3
  • 4.22e3
  • 4.90e3
85.86
  • 85.86
  • 83.59
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000028Segmentation:26+ somites
  • UBERON:00072322 cell stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
4.27e3
  • 4.27e3
  • 6.79e3
  • 1.38e4
  • 1.47e4
  • 1.48e4
85.71
  • 85.71
  • 77.27
  • 53.74
  • 50.90
  • 50.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.37e3
  • 6.37e3
78.69
  • 78.69
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.13e3
  • 7.13e3
76.13
  • 76.13
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.16e3
  • 7.16e3
76.04
  • 76.04
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.28e3
  • 7.28e3
75.61
  • 75.61
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.40e3
  • 8.40e3
71.89
  • 71.89
AEIR
  • AEIR
UBERON:0002100trunk
  • ZFS:0000027Segmentation:20-25 somites
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
9.96e3
  • 9.96e3
  • 1.14e4
  • 1.14e4
  • 1.15e4
  • 1.20e4
  • 1.26e4
66.65
  • 66.65
  • 61.75
  • 61.75
  • 61.53
  • 59.98
  • 57.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
9.96e3
  • 9.96e3
  • 1.08e4
  • 1.14e4
  • 1.25e4
  • 1.31e4
66.65
  • 66.65
  • 63.87
  • 61.75
  • 58.31
  • 56.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003053ventricular zone
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.03e4
  • 1.03e4
  • 1.12e4
65.37
  • 65.37
  • 62.49
AEIR
  • AEIR
  • AEIR
UBERON:2000088YSL
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
1.03e4
  • 1.03e4
  • 1.05e4
  • 1.07e4
  • 1.07e4
  • 1.07e4
  • 1.07e4
65.37
  • 65.37
  • 64.69
  • 64.27
  • 64.27
  • 64.27
  • 64.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000029Pharyngula:Prim-5
1.14e4
  • 1.14e4
61.88
  • 61.88
AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.15e4
  • 1.15e4
  • 1.22e4
61.34
  • 61.34
  • 59.06
AEIR
  • AEIR
  • AEIR
ZFA:0000092axis (Danio)
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000021Gastrula:90%-epiboly
1.16e4
  • 1.16e4
  • 1.16e4
  • 1.16e4
  • 1.23e4
  • 1.23e4
  • 1.23e4
61.09
  • 61.09
  • 61.09
  • 61.09
  • 58.80
  • 58.80
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.17e4
  • 1.17e4
  • 1.17e4
  • 1.20e4
  • 1.20e4
  • 1.26e4
60.84
  • 60.84
  • 60.68
  • 59.98
  • 59.98
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
1.18e4
  • 1.18e4
  • 1.21e4
  • 1.23e4
60.50
  • 60.50
  • 59.50
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
1.20e4
  • 1.20e4
  • 1.22e4
  • 1.24e4
  • 1.34e4
  • 1.36e4
59.97
  • 59.97
  • 59.06
  • 58.33
  • 54.97
  • 54.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004880chordamesoderm
  • ZFS:0000022Gastrula:Bud
1.24e4
  • 1.24e4
58.32
  • 58.32
AEIR
  • AEIR
UBERON:0003063prechordal plate
  • ZFS:0000022Gastrula:Bud
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:2007032midbrain neural rod
  • ZFS:0000024Segmentation:5-9 somites
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000026Segmentation:14-19 somites
1.29e4
  • 1.29e4
56.86
  • 56.86
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000026Segmentation:14-19 somites
1.33e4
  • 1.33e4
55.53
  • 55.53
AEIR
  • AEIR
UBERON:2000058polster
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
1.33e4
  • 1.33e4
  • 1.33e4
  • 1.34e4
  • 1.49e4
55.53
  • 55.53
  • 55.53
  • 54.97
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0008897fin
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.69
  • 53.69
AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000026Segmentation:14-19 somites
1.39e4
  • 1.39e4
53.55
  • 53.55
AEIR
  • AEIR
UBERON:2007026forebrain neural keel
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.39e4
  • 1.39e4
  • 1.49e4
  • 1.49e4
53.55
  • 53.55
  • 49.98
  • 49.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003069otic placode
  • ZFS:0000026Segmentation:14-19 somites
1.42e4
  • 1.42e4
52.60
  • 52.60
AEIR
  • AEIR
UBERON:0007812post-anal tail
  • ZFS:0000028Segmentation:26+ somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2007034forebrain neural rod
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0004879marginal zone of embryo
  • ZFS:0000016Blastula:30%-epiboly
1.49e4
  • 1.49e4
49.98
  • 49.98
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

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