D. rerio Gene: ube2d3 - ENSDARG00000038473 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000038473
Nameube2d3
Descriptionubiquitin-conjugating enzyme E2D 3 [Source:ZFIN;Acc:ZDB-GENE-030131-551]
OrganismDanio rerio (zebrafish)
Synonym(s)eff, fb36f02, wu:fb36f02, zgc:56340

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
747
  • 747
97.50
  • 97.50
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
800
  • 800
  • 1.45e4
97.32
  • 97.32
  • 51.36
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
819
  • 819
97.26
  • 97.26
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
910
  • 910
  • 1.05e3
  • 1.65e3
  • 1.80e3
  • 2.10e3
  • 2.13e3
  • 2.19e3
  • 2.62e3
  • 3.07e3
  • 3.35e3
  • 3.80e3
  • 4.15e3
  • 4.43e3
  • 6.35e3
  • 7.03e3
  • 7.91e3
  • 1.17e4
  • 1.38e4
  • 1.44e4
96.96
  • 96.96
  • 96.50
  • 94.49
  • 93.99
  • 92.98
  • 92.88
  • 92.67
  • 91.23
  • 89.73
  • 88.77
  • 87.28
  • 86.09
  • 85.17
  • 78.73
  • 76.46
  • 73.52
  • 60.73
  • 53.74
  • 51.88
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
968
  • 968
96.76
  • 96.76
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
969
  • 969
  • 1.10e3
  • 1.36e3
  • 2.85e3
  • 4.51e3
96.76
  • 96.76
  • 96.33
  • 95.44
  • 90.46
  • 84.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
1.03e3
  • 1.03e3
  • 1.54e3
  • 1.69e3
  • 1.74e3
  • 1.74e3
  • 2.15e3
  • 2.52e3
  • 3.45e3
  • 3.89e3
  • 3.96e3
96.56
  • 96.56
  • 94.84
  • 94.33
  • 94.17
  • 94.17
  • 92.79
  • 91.57
  • 88.44
  • 86.98
  • 86.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.07e3
  • 1.07e3
  • 3.15e3
  • 3.20e3
  • 4.94e3
96.42
  • 96.42
  • 89.45
  • 89.30
  • 83.46
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.17e3
  • 1.17e3
96.09
  • 96.09
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.20e3
  • 1.20e3
95.98
  • 95.98
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
1.25e3
  • 1.25e3
  • 1.91e3
  • 1.98e3
95.82
  • 95.82
  • 93.61
  • 93.39
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.28e3
  • 1.28e3
  • 2.43e3
95.73
  • 95.73
  • 91.88
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.44e3
  • 1.44e3
95.19
  • 95.19
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.50e3
  • 1.50e3
94.98
  • 94.98
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.79e3
  • 1.79e3
  • 2.96e3
94.01
  • 94.01
  • 90.10
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
2.01e3
  • 2.01e3
93.26
  • 93.26
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
2.09e3
  • 2.09e3
93.01
  • 93.01
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
2.09e3
  • 2.09e3
  • 1.50e4
92.99
  • 92.99
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.19e3
  • 2.19e3
92.66
  • 92.66
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.31e3
  • 2.31e3
92.27
  • 92.27
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.42e3
  • 2.42e3
91.91
  • 91.91
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.55e3
  • 2.55e3
91.47
  • 91.47
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.59e3
  • 2.59e3
91.34
  • 91.34
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
2.63e3
  • 2.63e3
  • 3.06e3
  • 4.40e3
  • 4.44e3
  • 6.27e3
  • 7.02e3
91.18
  • 91.18
  • 89.77
  • 85.28
  • 85.14
  • 78.99
  • 76.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
2.67e3
  • 2.67e3
  • 2.71e3
  • 1.41e4
91.08
  • 91.08
  • 90.91
  • 52.72
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.71e3
  • 2.71e3
90.94
  • 90.94
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
2.85e3
  • 2.85e3
90.46
  • 90.46
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.29e3
  • 3.29e3
88.98
  • 88.98
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.41e3
  • 3.41e3
88.58
  • 88.58
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.51e3
  • 3.51e3
88.26
  • 88.26
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
3.87e3
  • 3.87e3
  • 5.63e3
87.03
  • 87.03
  • 81.15
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.15e3
  • 4.15e3
86.09
  • 86.09
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.52e3
  • 4.52e3
84.87
  • 84.87
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.78e3
  • 6.78e3
77.29
  • 77.29
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000104life cycle
8.79e3
  • 8.79e3
  • 9.13e3
  • 9.71e3
  • 9.96e3
  • 1.43e4
70.57
  • 70.57
  • 69.43
  • 67.48
  • 66.65
  • 52.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.18e4
  • 1.18e4
60.56
  • 60.56
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.26e4
  • 1.26e4
57.80
  • 57.80
AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
1.33e4
  • 1.33e4
  • 1.34e4
  • 1.34e4
  • 1.34e4
  • 1.41e4
  • 1.41e4
  • 1.41e4
55.53
  • 55.53
  • 55.24
  • 54.97
  • 54.97
  • 52.75
  • 52.75
  • 52.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC047863, BC155782, CR559945
EnsemblENSDARG00000038473 (ube2d3)
Uniprot/SPTREMBLA9JRT4, A9JRT4_DANRE, Q7ZUR2, Q7ZUR2_DANRE
ZFINZDB-GENE-030131-551 (ube2d3)

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