D. rerio Gene: cox6c - ENSDARG00000038577 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000038577
Namecox6c
Descriptioncytochrome c oxidase subunit VIc [Source:ZFIN;Acc:ZDB-GENE-040724-95]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-239j9.2

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
72.2
  • 72.2
99.76
  • 99.76
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
96.2
  • 96.2
  • 553
  • 608
  • 1.24e3
99.68
  • 99.68
  • 98.15
  • 97.97
  • 95.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
140
  • 140
  • 531
99.54
  • 99.54
  • 98.23
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
149
  • 149
  • 223
99.51
  • 99.51
  • 99.26
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
165
  • 165
99.45
  • 99.45
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
171
  • 171
99.43
  • 99.43
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
192
  • 192
99.36
  • 99.36
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
212
  • 212
99.29
  • 99.29
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
215
  • 215
  • 233
  • 359
  • 424
  • 480
  • 572
  • 592
  • 712
  • 823
  • 889
99.28
  • 99.28
  • 99.22
  • 98.80
  • 98.58
  • 98.40
  • 98.09
  • 98.02
  • 97.62
  • 97.25
  • 97.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
228
  • 228
99.24
  • 99.24
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
229
  • 229
99.24
  • 99.24
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
236
  • 236
99.21
  • 99.21
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
238
  • 238
99.21
  • 99.21
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
284
  • 284
99.05
  • 99.05
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
289
  • 289
99.04
  • 99.04
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
294
  • 294
  • 383
  • 581
99.02
  • 99.02
  • 98.72
  • 98.06
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
328
  • 328
98.90
  • 98.90
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
341
  • 341
  • 486
  • 1.08e3
  • 1.77e3
  • 2.05e3
  • 2.83e3
98.86
  • 98.86
  • 98.38
  • 96.40
  • 94.09
  • 93.13
  • 90.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
358
  • 358
98.80
  • 98.80
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
394
  • 394
98.68
  • 98.68
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
395
  • 395
98.68
  • 98.68
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
395
  • 395
  • 435
  • 469
  • 483
  • 487
  • 488
  • 667
  • 923
  • 1.01e3
  • 1.14e3
  • 1.33e3
  • 1.37e3
  • 2.52e3
  • 7.09e3
98.68
  • 98.68
  • 98.55
  • 98.43
  • 98.39
  • 98.37
  • 98.37
  • 97.77
  • 96.91
  • 96.61
  • 96.20
  • 95.56
  • 95.43
  • 91.58
  • 76.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
434
  • 434
98.55
  • 98.55
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
604
  • 604
97.98
  • 97.98
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
752
  • 752
  • 960
97.48
  • 97.48
  • 96.79
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
986
  • 986
96.70
  • 96.70
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.02e3
  • 1.02e3
96.58
  • 96.58
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
1.30e3
  • 1.30e3
  • 1.66e3
  • 2.45e3
  • 3.68e3
  • 4.17e3
95.66
  • 95.66
  • 94.45
  • 91.80
  • 87.70
  • 86.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.68e3
  • 3.68e3
87.69
  • 87.69
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.87e3
  • 3.87e3
87.03
  • 87.03
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.99e3
  • 3.99e3
86.63
  • 86.63
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
7.06e3
  • 7.06e3
76.37
  • 76.37
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLAL929108
EnsemblENSDARG00000038577 (cox6c)
Uniprot/SPTREMBLQ6ZM23, Q6ZM23_DANRE
ZFINZDB-GENE-040724-95 (cox6c)

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