D. rerio Gene: hkdc1 - ENSDARG00000038703 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000038703
Namehkdc1
Descriptionhexokinase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9801]
OrganismDanio rerio (zebrafish)
Synonym(s)cb370, drshxk1, sb:cb370
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.60e3
  • 1.60e3
  • 4.78e3
94.66
  • 94.66
  • 83.99
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.70e3
  • 1.70e3
94.32
  • 94.32
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
2.68e3
  • 2.68e3
  • 8.71e3
  • 8.96e3
  • 1.31e4
  • 1.35e4
91.03
  • 91.03
  • 70.82
  • 69.99
  • 56.23
  • 54.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000068embryo stage
3.56e3
  • 3.56e3
  • 7.13e3
  • 1.49e4
88.10
  • 88.10
  • 76.12
  • 50.20
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
5.44e3
  • 5.44e3
81.80
  • 81.80
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
6.57e3
  • 6.57e3
78.02
  • 78.02
AEIR
  • AEIR
UBERON:0003922pancreatic epithelial bud
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
8.15e3
  • 8.15e3
  • 9.96e3
72.72
  • 72.72
  • 66.66
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
8.88e3
  • 8.88e3
  • 1.48e4
70.28
  • 70.28
  • 50.48
AEIR
  • AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
9.19e3
  • 9.19e3
  • 9.60e3
  • 1.47e4
69.22
  • 69.22
  • 67.85
  • 50.71
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
9.34e3
  • 9.34e3
  • 9.34e3
  • 1.05e4
  • 1.05e4
  • 1.10e4
68.74
  • 68.74
  • 68.74
  • 64.98
  • 64.98
  • 63.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000925endoderm
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.96e3
  • 9.96e3
  • 1.03e4
  • 1.07e4
66.66
  • 66.66
  • 65.37
  • 64.27
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.86
  • 63.86
AEIR
  • AEIR
UBERON:2000088YSL
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
1.10e4
  • 1.10e4
  • 1.10e4
  • 1.10e4
  • 1.20e4
  • 1.23e4
  • 1.26e4
  • 1.28e4
  • 1.28e4
  • 1.28e4
  • 1.28e4
63.32
  • 63.32
  • 63.32
  • 63.32
  • 59.98
  • 58.80
  • 57.68
  • 57.13
  • 57.13
  • 57.13
  • 57.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
1.19e4
  • 1.19e4
  • 1.21e4
  • 1.38e4
  • 1.42e4
  • 1.65e4
60.00
  • 60.00
  • 59.40
  • 53.85
  • 52.60
  • 44.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.53
  • 50.53
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.85
  • 49.85
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.49
  • 46.49
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.62e4
  • 1.62e4
45.73
  • 45.73
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.36
  • 44.36
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
43.78
  • 43.78
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.76
  • 40.76
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.66
  • 40.66
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.08e4
  • 2.08e4
30.51
  • 30.51
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.34e4
  • 2.34e4
21.63
  • 21.63
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Bilateria2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000038703.

Cross-references

EnsemblENSDARG00000038703 (hkdc1)
ZFINZDB-GENE-030131-9801 (hkdc1)
EMBLBX546482
Uniprot/SPTREMBLB8A5H6, B8A5H6_DANRE

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