D. rerio Gene: ppid - ENSDARG00000038835 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000038835
Nameppid
Descriptionpeptidylprolyl isomerase D [Source:ZFIN;Acc:ZDB-GENE-040625-34]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fb18b07, zgc:86711
Orthologs(s)22 orthologs
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
493
  • 493
  • 1.47e4
98.35
  • 98.35
  • 50.88
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
561
  • 561
98.13
  • 98.13
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000037Larval:Day 5
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
791
  • 791
  • 793
  • 1.12e3
  • 1.15e3
  • 1.27e3
  • 1.49e3
  • 1.58e3
  • 1.87e3
  • 2.06e3
  • 2.20e3
  • 2.28e3
  • 2.85e3
  • 4.75e3
  • 5.96e3
  • 1.16e4
  • 1.41e4
  • 1.45e4
97.36
  • 97.36
  • 97.35
  • 96.26
  • 96.17
  • 95.74
  • 95.02
  • 94.72
  • 93.76
  • 93.10
  • 92.63
  • 92.35
  • 90.46
  • 84.09
  • 80.04
  • 61.13
  • 52.86
  • 51.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000037Larval:Day 5
885
  • 885
  • 985
  • 1.13e3
  • 1.17e3
  • 1.30e3
  • 1.49e3
  • 1.56e3
  • 1.65e3
  • 1.80e3
  • 1.90e3
97.04
  • 97.04
  • 96.71
  • 96.21
  • 96.07
  • 95.64
  • 95.00
  • 94.78
  • 94.48
  • 93.96
  • 93.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.06e3
  • 1.06e3
  • 1.50e3
  • 6.48e3
  • 8.69e3
96.45
  • 96.45
  • 94.99
  • 78.29
  • 70.90
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.06e3
  • 1.06e3
96.45
  • 96.45
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.40e3
  • 1.40e3
  • 2.82e3
95.33
  • 95.33
  • 90.56
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.50e3
  • 1.50e3
  • 2.87e3
  • 1.49e4
94.97
  • 94.97
  • 90.40
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.76e3
  • 1.76e3
94.11
  • 94.11
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.86e3
  • 1.86e3
  • 4.04e3
93.79
  • 93.79
  • 86.47
AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.95e3
  • 1.95e3
93.47
  • 93.47
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
2.03e3
  • 2.03e3
  • 2.56e3
  • 3.03e3
  • 3.10e3
  • 4.30e3
  • 4.52e3
93.22
  • 93.22
  • 91.42
  • 89.86
  • 89.62
  • 85.60
  • 84.88
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.13e3
  • 2.13e3
92.86
  • 92.86
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
2.38e3
  • 2.38e3
  • 3.17e3
  • 3.22e3
92.02
  • 92.02
  • 89.40
  • 89.21
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.44e3
  • 2.44e3
91.82
  • 91.82
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.68e3
  • 2.68e3
91.02
  • 91.02
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.93e3
  • 2.93e3
90.19
  • 90.19
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.02e3
  • 3.02e3
89.88
  • 89.88
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.14e3
  • 3.14e3
89.50
  • 89.50
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.22e3
  • 3.22e3
89.22
  • 89.22
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
3.40e3
  • 3.40e3
  • 1.43e4
88.61
  • 88.61
  • 52.10
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.48e3
  • 3.48e3
88.36
  • 88.36
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
4.10e3
  • 4.10e3
86.26
  • 86.26
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.13e3
  • 4.13e3
86.19
  • 86.19
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
4.23e3
  • 4.23e3
  • 4.26e3
  • 4.61e3
  • 7.35e3
  • 7.42e3
85.85
  • 85.85
  • 85.73
  • 84.58
  • 75.40
  • 75.15
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
4.27e3
  • 4.27e3
85.69
  • 85.69
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.54e3
  • 4.54e3
84.80
  • 84.80
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
4.75e3
  • 4.75e3
84.09
  • 84.09
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
4.77e3
  • 4.77e3
  • 7.97e3
84.04
  • 84.04
  • 73.32
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.14e3
  • 5.14e3
82.80
  • 82.80
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.16e3
  • 5.16e3
82.71
  • 82.71
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.45e3
  • 5.45e3
81.77
  • 81.77
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.56e3
  • 5.56e3
81.38
  • 81.38
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.22e3
  • 6.22e3
79.16
  • 79.16
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.39e3
  • 6.39e3
78.60
  • 78.60
AEIR
  • AEIR
UBERON:0001997olfactory epithelium
  • UBERON:0000104life cycle
1.26e4
  • 1.26e4
57.73
  • 57.73
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.28e4
  • 1.28e4
57.14
  • 57.14
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000038835.

Cross-references

EnsemblENSDARG00000038835 (ppid)
ZFINZDB-GENE-040625-34 (ppid)
EMBLBC071388
Uniprot/SPTREMBLF1QXN7, F1QXN7_DANRE, F1R5R3, F1R5R3_DANRE, Q6IQL7, Q6IQL7_DANRE

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