D. rerio Gene: tmx3 - ENSDARG00000038894 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000038894
Nametmx3
Descriptionthioredoxin-related transmembrane protein 3 [Source:ZFIN;Acc:ZDB-GENE-050522-396]
OrganismDanio rerio (zebrafish)
Synonym(s)txndc10, zgc:110025
Orthologs(s)8 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.30e3
  • 1.30e3
  • 8.11e3
95.64
  • 95.64
  • 72.84
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000066fully formed stage
2.28e3
  • 2.28e3
  • 1.14e4
  • 1.17e4
  • 1.46e4
92.38
  • 92.38
  • 61.88
  • 60.84
  • 51.07
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.62e3
  • 3.62e3
87.89
  • 87.89
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
4.25e3
  • 4.25e3
  • 9.45e3
  • 2.11e4
  • 2.15e4
  • 2.33e4
85.78
  • 85.78
  • 68.36
  • 29.24
  • 27.94
  • 22.08
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
5.29e3
  • 5.29e3
  • 1.74e4
82.31
  • 82.31
  • 41.68
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.43e3
  • 5.43e3
81.82
  • 81.82
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
5.77e3
  • 5.77e3
80.67
  • 80.67
AEIR
  • AEIR
UBERON:0001787photoreceptor layer of retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
7.47e3
  • 7.47e3
  • 8.96e3
  • 9.33e3
75.00
  • 75.00
  • 69.99
  • 68.74
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
9.17e3
  • 9.17e3
69.30
  • 69.30
AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
9.33e3
  • 9.33e3
  • 1.10e4
  • 1.20e4
  • 1.20e4
  • 1.21e4
  • 1.21e4
  • 1.21e4
  • 1.25e4
68.74
  • 68.74
  • 63.14
  • 59.98
  • 59.98
  • 59.50
  • 59.36
  • 59.36
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.18e4
  • 1.18e4
60.44
  • 60.44
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.29e4
  • 1.29e4
  • 1.43e4
56.93
  • 56.93
  • 52.04
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.90
  • 47.90
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
1.69e4
  • 1.69e4
43.37
  • 43.37
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.85e4
  • 1.85e4
38.10
  • 38.10
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.95e4
  • 1.95e4
34.58
  • 34.58
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.16e4
  • 2.16e4
27.62
  • 27.62
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.41e4
  • 2.41e4
19.20
  • 19.20
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Bilateria7 species8 genesCompare expression

Orthology information comes from OMA : ENSDARG00000038894.

Cross-references

EnsemblENSDARG00000038894 (tmx3)
ZFINZDB-GENE-050522-396 (tmx3)
EMBLBX649522
Uniprot/SPTREMBLB8A5U6, B8A5U6_DANRE, B8A5U7, B8A5U7_DANRE

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