D. rerio Gene: zgc:113691 - ENSDARG00000038898 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000038898
Namezgc:113691
Descriptionzgc:113691 [Source:ZFIN;Acc:ZDB-GENE-050220-7]
OrganismDanio rerio (zebrafish)
Synonym(s)im:7152403, zgc:158555
Orthologs(s)1 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.39e3
  • 1.39e3
95.34
  • 95.34
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.26e3
  • 3.26e3
89.08
  • 89.08
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
5.32e3
  • 5.32e3
  • 9.31e3
82.19
  • 82.19
  • 68.84
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.68e3
  • 7.68e3
74.27
  • 74.27
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
7.82e3
  • 7.82e3
73.82
  • 73.82
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
8.38e3
  • 8.38e3
71.94
  • 71.94
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
8.66e3
  • 8.66e3
71.00
  • 71.00
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
9.75e3
  • 9.75e3
  • 1.13e4
67.35
  • 67.35
  • 62.23
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.24
  • 65.24
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
1.14e4
  • 1.14e4
  • 1.20e4
  • 1.29e4
  • 1.41e4
61.88
  • 61.88
  • 59.98
  • 56.65
  • 52.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
1.20e4
  • 1.20e4
  • 1.22e4
  • 1.22e4
  • 1.32e4
59.98
  • 59.98
  • 59.06
  • 59.06
  • 55.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.90
  • 53.90
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
1.50e4
  • 1.50e4
  • 1.54e4
  • 1.63e4
  • 2.22e4
49.76
  • 49.76
  • 48.29
  • 45.37
  • 25.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
46.83
  • 46.83
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.54
  • 46.54
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
1.76e4
  • 1.76e4
41.22
  • 41.22
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.86e4
  • 1.86e4
37.77
  • 37.77
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.87e4
  • 1.87e4
  • 2.18e4
37.30
  • 37.30
  • 27.11
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.90e4
  • 1.90e4
36.27
  • 36.27
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.92e4
  • 1.92e4
35.58
  • 35.58
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
2.13e4
  • 2.13e4
28.64
  • 28.64
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.20e4
  • 2.20e4
26.47
  • 26.47
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.30e4
  • 2.30e4
23.12
  • 23.12
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi1 species1 geneCompare expression

Orthology information comes from OMA : ENSDARG00000038898.

Cross-references

EnsemblENSDARG00000038898 (zgc:113691)
ZFINZDB-GENE-050220-7 (zgc:113691)
EMBLBX248497
Uniprot/SPTREMBLB0S5I7, B0S5I7_DANRE, F1QF27, F1QF27_DANRE

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