D. rerio Gene: traf4b - ENSDARG00000038964 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000038964
Nametraf4b
Descriptiontnf receptor-associated factor 4b [Source:ZFIN;Acc:ZDB-GENE-040305-2]
OrganismDanio rerio (zebrafish)
Synonym(s)traf4
Orthologs(s)6 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.26e3
  • 4.26e3
85.74
  • 85.74
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.75e3
  • 6.75e3
77.41
  • 77.41
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
7.85e3
  • 7.85e3
  • 9.38e3
73.70
  • 73.70
  • 68.61
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
8.14e3
  • 8.14e3
72.73
  • 72.73
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
8.22e3
  • 8.22e3
  • 1.10e4
  • 1.10e4
  • 1.19e4
  • 1.27e4
72.48
  • 72.48
  • 63.30
  • 63.01
  • 60.10
  • 57.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
8.57e3
  • 8.57e3
71.32
  • 71.32
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • UBERON:0000104life cycle
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
8.64e3
  • 8.64e3
  • 1.33e4
  • 1.33e4
  • 1.34e4
  • 1.40e4
  • 1.43e4
  • 1.46e4
  • 1.47e4
  • 1.48e4
  • 1.50e4
71.07
  • 71.07
  • 55.53
  • 55.31
  • 55.27
  • 53.27
  • 52.25
  • 51.13
  • 50.90
  • 50.32
  • 49.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.96
  • 65.96
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.64
  • 63.64
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.74
  • 62.74
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.12e4
  • 1.12e4
62.62
  • 62.62
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.94
  • 57.94
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.92
  • 57.92
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.29e4
  • 1.29e4
  • 1.37e4
  • 1.41e4
56.92
  • 56.92
  • 54.15
  • 52.76
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
1.30e4
  • 1.30e4
  • 1.35e4
  • 1.42e4
  • 1.47e4
  • 1.65e4
  • 1.70e4
56.44
  • 56.44
  • 54.69
  • 52.39
  • 50.71
  • 44.86
  • 43.11
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
1.31e4
  • 1.31e4
  • 1.37e4
  • 1.46e4
56.29
  • 56.29
  • 53.99
  • 51.03
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
  • 2.04e4
53.12
  • 53.12
  • 31.61
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
53.05
  • 53.05
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
51.20
  • 51.20
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.52
  • 50.52
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
50.25
  • 50.25
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.66e4
  • 1.66e4
44.31
  • 44.31
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.84e4
  • 1.84e4
  • 1.98e4
38.43
  • 38.43
  • 33.66
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.86e4
  • 1.86e4
37.60
  • 37.60
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Bilateria6 species6 genesCompare expression

Orthology information comes from OMA : ENSDARG00000038964.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Metazoa2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000038964.

Cross-references

EnsemblENSDARG00000038964 (traf4b)
ZFINZDB-GENE-040305-2 (traf4b)
EMBLAJ556549, BC078361, BC165750, CU463284
Uniprot/SPTREMBLQ7T1K1, Q7T1K1_DANRE

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