D. rerio Gene: marcksl1a - ENSDARG00000039034 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000039034
Namemarcksl1a
DescriptionMARCKS-like 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2146]
OrganismDanio rerio (zebrafish)
Synonym(s)cb575, marcks1, marcksl1, marcksl1gn, sb:cb575, wu:fa66h03, wu:fj18a04, zgc:65840
Orthologs(s)15 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
182
  • 182
  • 458
  • 504
  • 532
  • 556
99.40
  • 99.40
  • 98.47
  • 98.32
  • 98.22
  • 98.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
249
  • 249
99.17
  • 99.17
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
297
  • 297
99.01
  • 99.01
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
338
  • 338
  • 1.53e3
98.87
  • 98.87
  • 94.87
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
402
  • 402
  • 644
98.66
  • 98.66
  • 97.85
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
417
  • 417
  • 692
98.61
  • 98.61
  • 97.69
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
425
  • 425
  • 1.28e4
98.58
  • 98.58
  • 57.29
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
457
  • 457
98.47
  • 98.47
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
580
  • 580
  • 1.41e4
98.06
  • 98.06
  • 52.72
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
781
  • 781
97.39
  • 97.39
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
863
  • 863
  • 1.19e4
97.11
  • 97.11
  • 60.17
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
875
  • 875
97.07
  • 97.07
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
924
  • 924
96.91
  • 96.91
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
944
  • 944
  • 1.35e3
96.84
  • 96.84
  • 95.49
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.36e3
  • 1.36e3
95.46
  • 95.46
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.39e3
  • 1.39e3
95.35
  • 95.35
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.40e3
  • 1.40e3
95.30
  • 95.30
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.42e3
  • 1.42e3
95.25
  • 95.25
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.36e3
  • 2.36e3
92.09
  • 92.09
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.24e3
  • 3.24e3
89.16
  • 89.16
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000104life cycle
  • ZFS:0000049segmentation
4.27e3
  • 4.27e3
  • 1.12e4
  • 1.15e4
  • 1.21e4
  • 1.41e4
  • 1.45e4
  • 1.47e4
  • 1.49e4
85.71
  • 85.71
  • 62.44
  • 61.54
  • 59.61
  • 52.87
  • 51.57
  • 50.90
  • 49.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
5.80e3
  • 5.80e3
80.57
  • 80.57
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
7.06e3
  • 7.06e3
76.35
  • 76.35
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
7.86e3
  • 7.86e3
  • 7.91e3
  • 7.91e3
  • 9.60e3
  • 1.07e4
  • 1.10e4
  • 1.38e4
  • 1.39e4
73.67
  • 73.67
  • 73.52
  • 73.52
  • 67.85
  • 64.27
  • 63.32
  • 53.83
  • 53.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.17e3
  • 8.17e3
72.65
  • 72.65
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
9.26e3
  • 9.26e3
69.00
  • 69.00
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.18e4
  • 1.18e4
  • 1.28e4
  • 1.39e4
  • 1.49e4
60.48
  • 60.48
  • 57.14
  • 53.31
  • 49.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0008897fin
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.75
  • 52.75
AEIR
  • AEIR
UBERON:0000004nose
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.49e4
  • 1.49e4
  • 1.49e4
49.98
  • 49.98
  • 49.97
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Neopterygii1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000039034.

Cross-references

EnsemblENSDARG00000039034 (marcksl1a)
ZFINZDB-GENE-040426-2146 (marcksl1a)
EMBLBC058848, CU571066, JF894245
Uniprot/SPTREMBLQ6PD99, Q6PD99_DANRE

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