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D. rerio Gene: klhl40a - ENSDARG00000039052 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000039052
Nameklhl40a
Descriptionkelch-like family member 40a [Source:ZFIN;Acc:ZDB-GENE-050916-1]
OrganismDanio rerio (zebrafish)
Synonym(s)b8jl77, kbtbd5, kbtbd5a, q66l56
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.67e3
  • 1.67e3
  • 3.78e3
94.42
  • 94.42
  • 87.33
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.10e3
  • 2.10e3
92.97
  • 92.97
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.12e3
  • 2.12e3
92.92
  • 92.92
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
3.47e3
  • 3.47e3
  • 4.05e3
  • 5.44e3
  • 5.79e3
  • 1.22e4
88.38
  • 88.38
  • 86.43
  • 81.78
  • 80.60
  • 59.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
6.45e3
  • 6.45e3
  • 9.12e3
78.41
  • 78.41
  • 69.45
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.78e3
  • 6.78e3
77.29
  • 77.29
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.07
  • 60.07
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.68
  • 59.68
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.01
  • 55.01
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
1.37e4
  • 1.37e4
  • 1.39e4
54.13
  • 54.13
  • 53.41
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.13
  • 54.13
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.35
  • 45.35
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
43.05
  • 43.05
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.90e4
  • 1.90e4
36.30
  • 36.30
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression
Chordata3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000039052.

Cross-references

EnsemblENSDARG00000039052 (klhl40a)
ZFINZDB-GENE-050916-1 (klhl40a)
EMBLBC078427, BC163267, CU464125
Uniprot/SWISSPROTB3DIV9, KL40A_DANRE

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