Gene: trpc2a - ENSDARG00000039065 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000039065
Name	trpc2a
Description	transient receptor potential cation channel, subfamily C, member 2a [Source:ZFIN;Acc:ZDB-GENE-130530-602]
Organism	Danio rerio (zebrafish)
Synonym(s)	si:dkey-93k4.1, trpc2b, zmp:0000000599
Orthologs(s)	12 orthologs
Paralog(s)	1 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0000307	blastula	[+] 2 stages ZFS:0000011Blastula:1k-cell ZFS:0000015Blastula:Dome	1.19e4 1.19e4 1.35e4	60.23 60.23 54.75	AEIR AEIR AEIR
UBERON:0019248	early embryo	[+] 1 stage UBERON:0000107cleavage stage	1.38e4 1.38e4	53.63 53.63	AEIR AEIR
CL:0000207	olfactory receptor cell	[+] 3 stages ZFS:0000029Pharyngula:Prim-5 ZFS:0000033Hatching:Long-pec ZFS:0000037Larval:Day 5	1.49e4 1.49e4 1.49e4 1.49e4	50.00 50.00 50.00 50.00	AEIR AEIR AEIR AEIR
UBERON:0000922	embryo	[+] 3 stages UBERON:0000068embryo stage ZFS:0000029Pharyngula:Prim-5 UBERON:0004707pharyngula stage	1.82e4 1.82e4 2.07e4 2.33e4	39.11 39.11 30.68 22.12	AEIR AEIR AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	2.21e4 2.21e4	25.89 25.89	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

In situ hybridization data: ZFIN
RNA-Seq data: Bgee

Sources of raw data:

In situ hybridization data: ZFIN
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	11 species Mus musculus (mouse) Rattus norvegicus (rat) Bos taurus (cattle) Sus scrofa (pig) Equus caballus (horse) Oryctolagus cuniculus (rabbit) Canis lupus familiaris (dog) Felis catus (cat) Cavia porcellus (guinea pig) Monodelphis domestica (opossum) Xenopus tropicalis (western clawed frog)	12 genes ENSMUSG00000070425 Xntrpc ENSMUSG00000100254 Trpc2 ENSRNOG00000020188 Trpc2 ENSBTAG00000011549 ENSSSCG00000014799 ENSECAG00000013026 ENSOCUG00000012313 ENSCAFG00000005848 ENSFCAG00000026180 ENSCPOG00000008849 ENSMODG00000008210 ENSXETG00000004224 trpc2	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000039065.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Otophysi	1 gene ENSDARG00000003344 trpc2b	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000039065.

Cross-references

Ensembl	ENSDARG00000039065 (trpc2a)
ZFIN	ZDB-GENE-130530-602 (trpc2a)
EMBL	BX571707, CU929059
Uniprot/SPTREMBL	F1R2N4, F1R2N4_DANRE, X1WE59, X1WE59_DANRE