D. rerio Gene: nkx2.3 - ENSDARG00000039095 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000039095
Namenkx2.3
DescriptionNK2 homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-990415-178]
OrganismDanio rerio (zebrafish)
Synonym(s)nk2.3, nkx2-3, q6nyn2

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.19e3
  • 2.19e3
92.69
  • 92.69
AEIR
  • AEIR
UBERON:0004117pharyngeal pouch
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000035Larval:Protruding-mouth
2.99e3
  • 2.99e3
  • 4.98e3
  • 4.98e3
  • 8.96e3
  • 1.49e4
  • 1.49e4
90.00
  • 90.00
  • 83.34
  • 83.34
  • 70.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007123pharyngeal pouch 2
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
4.98e3
  • 4.98e3
  • 7.47e3
  • 1.49e4
83.34
  • 83.34
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007124pharyngeal pouch 3
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
4.98e3
  • 4.98e3
  • 7.47e3
  • 1.49e4
83.34
  • 83.34
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007125pharyngeal pouch 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
4.98e3
  • 4.98e3
  • 7.47e3
  • 1.49e4
83.34
  • 83.34
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007690early pharyngeal endoderm
  • ZFS:0000030Pharyngula:Prim-15
4.98e3
  • 4.98e3
83.34
  • 83.34
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.03e3
  • 6.03e3
79.82
  • 79.82
AEIR
  • AEIR
UBERON:0007122pharyngeal pouch 1
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
  • 1.49e4
  • 1.49e4
75.00
  • 75.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007126pharyngeal pouch 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
8.84e3
  • 8.84e3
  • 1.02e4
  • 1.04e4
  • 1.08e4
  • 1.12e4
  • 1.13e4
  • 1.16e4
  • 1.24e4
  • 1.32e4
  • 1.74e4
70.42
  • 70.42
  • 65.87
  • 65.27
  • 63.92
  • 62.50
  • 62.29
  • 61.02
  • 58.61
  • 55.80
  • 41.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.02e4
  • 1.02e4
  • 1.09e4
  • 1.17e4
65.74
  • 65.74
  • 63.46
  • 60.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000925endoderm
  • ZFS:0000033Hatching:Long-pec
1.07e4
  • 1.07e4
64.28
  • 64.28
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
1.08e4
  • 1.08e4
63.80
  • 63.80
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000036Larval:Day 4
  • UBERON:0000068embryo stage
  • ZFS:0000049segmentation
  • UBERON:0000104life cycle
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
1.10e4
  • 1.10e4
  • 1.15e4
  • 1.17e4
  • 1.18e4
  • 1.41e4
  • 1.43e4
  • 1.45e4
  • 1.47e4
  • 1.77e4
  • 1.83e4
  • 1.83e4
  • 1.84e4
63.24
  • 63.24
  • 61.34
  • 60.76
  • 60.43
  • 52.71
  • 52.23
  • 51.51
  • 50.90
  • 40.62
  • 38.72
  • 38.62
  • 38.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.00
  • 62.00
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
1.21e4
  • 1.21e4
  • 1.65e4
59.59
  • 59.59
  • 44.91
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.29e4
  • 1.29e4
56.73
  • 56.73
AEIR
  • AEIR
UBERON:0001042chordate pharynx
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000034Hatching:Pec-fin
1.38e4
  • 1.38e4
  • 1.49e4
53.83
  • 53.83
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000033Hatching:Long-pec
1.39e4
  • 1.39e4
53.55
  • 53.55
AEIR
  • AEIR
UBERON:0000924ectoderm
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002199integument
  • ZFS:0000034Hatching:Pec-fin
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
  • 1.77e4
50.00
  • 50.00
  • 40.77
AEIR
  • AEIR
  • AEIR
UBERON:0007127pharyngeal pouch 6
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2001129pharyngeal pouches 2-6
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001708jaw skeleton
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0005884hyoid arch skeleton
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000034Hatching:Pec-fin
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0008896post-hyoid pharyngeal arch
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.57
  • 45.57
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.87
  • 44.87
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.37
  • 44.37
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.70e4
  • 1.70e4
42.97
  • 42.97
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.77
  • 38.77
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.84e4
  • 1.84e4
38.49
  • 38.49
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.96e4
  • 1.96e4
34.37
  • 34.37
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
2.23e4
  • 2.23e4
25.43
  • 25.43
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.57e4
  • 2.57e4
14.04
  • 14.04
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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