Gene: TRIM35 (1 to many) - ENSDARG00000039108 - Danio rerio (zebrafish)

General information

Ensembl ID	ENSDARG00000039108
Name	TRIM35 (1 to many)
Description	zgc:113250 [Source:ZFIN;Acc:ZDB-GENE-050327-87]
Organism	Danio rerio (zebrafish)
Synonym(s)	hls5, kiaa1098, mair
Orthologs(s)	2 orthologs
Paralog(s)	28 paralogs

Expression

Anat. entity ID	Anatomical entity	Developmental stage(s)	Rank score	Expression score	Sources
UBERON:0002107	liver	[+] 1 stage UBERON:0000066fully formed stage	7.23e3 7.23e3	75.79 75.79	AEIR AEIR
UBERON:0002113	kidney	[+] 1 stage UBERON:0000066fully formed stage	9.72e3 9.72e3	67.44 67.44	AEIR AEIR
UBERON:0007132	head kidney	[+] 1 stage UBERON:0000066fully formed stage	1.15e4 1.15e4	61.48 61.48	AEIR AEIR
UBERON:0004734	gastrula	[+] 1 stage ZFS:0000022Gastrula:Bud	1.19e4 1.19e4	60.25 60.25	AEIR AEIR
UBERON:0000014	zone of skin	[+] 1 stage UBERON:0000066fully formed stage	1.29e4 1.29e4	56.87 56.87	AEIR AEIR
UBERON:0000922	embryo	[+] 5 stages UBERON:0004707pharyngula stage UBERON:0000068embryo stage ZFS:0000029Pharyngula:Prim-5 ZFS:0000033Hatching:Long-pec ZFS:0000037Larval:Day 5	1.58e4 1.58e4 1.69e4 1.83e4 2.02e4 2.24e4	47.20 47.20 43.58 38.73 32.51 25.10	AEIR AEIR AEIR AEIR AEIR AEIR
UBERON:0000206	pharyngeal gill	[+] 1 stage UBERON:0000066fully formed stage	1.76e4 1.76e4	41.01 41.01	AEIR AEIR
UBERON:0002548	larva	[+] 2 stages UBERON:0000069larval stage ZFS:0000037Larval:Day 5	1.76e4 1.76e4 2.20e4	40.91 40.91 26.26	AEIR AEIR AEIR
UBERON:0002481	bone tissue	[+] 1 stage UBERON:0000066fully formed stage	1.88e4 1.88e4	36.98 36.98	AEIR AEIR
UBERON:0001630	muscle organ	[+] 1 stage UBERON:0000066fully formed stage	2.17e4 2.17e4	27.33 27.33	AEIR AEIR
UBERON:0002415	tail	[+] 1 stage UBERON:0000066fully formed stage	2.28e4 2.28e4	23.70 23.70	AEIR AEIR
UBERON:0000033	head	[+] 1 stage UBERON:0000066fully formed stage	2.30e4 2.30e4	23.14 23.14	AEIR AEIR

Sources
A	Affymetrix
E	EST
I	In Situ
R	RNA-Seq

data

no data

Rank scores
3.25e4	lightgrey: low confidence scores
	important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:

EST data: Bgee
RNA-Seq data: Bgee

Sources of raw data:

EST data: UniGene
RNA-Seq data: GEO

Orthologs

Taxon name	Species with orthologs	Gene(s)	Expression comparison	See details
Euteleostomi	2 species Ornithorhynchus anatinus (platypus) Anolis carolinensis (green anole)	2 genes ENSOANG00000010273 ENSACAG00000017194	Compare expression	[+]

Orthology information comes from OMA : ENSDARG00000039108.

Paralogs (same species)

Taxon name	Gene(s)	Expression comparison	See details
Otophysi	25 genes ENSDARG00000022271 trim35-34 ENSDARG00000031534 TRIM35 (1 to many) ENSDARG00000033071 trim35-10 ENSDARG00000040230 TRIM35 (1 to many) ENSDARG00000052097 trim35-31 ENSDARG00000052255 trim35-3 ENSDARG00000055730 trim35-29 ENSDARG00000058958 TRIM35 (1 to many) ENSDARG00000060838 trim35-33 ENSDARG00000070847 trim35-20 ENSDARG00000071241 trim35-39 ENSDARG00000092407 TRIM35 (1 to many) ENSDARG00000093859 TRIM35 (1 to many) ENSDARG00000095913 TRIM35 (1 to many) ENSDARG00000099639 trim35-19 ENSDARG00000099684 trim35-24 ENSDARG00000100373 TRIM35 (1 to many) ENSDARG00000100721 TRIM35 (1 to many) ENSDARG00000101055 trim35-25 ENSDARG00000102219 TRIM35 (1 to many) ENSDARG00000102264 trim35-22 ENSDARG00000102303 trim35-21 ENSDARG00000102368 trim35-23 ENSDARG00000103154 TRIM35 (1 to many) ENSDARG00000104825 trim35-7	Compare expression	[+]
Clupeocephala	26 genes ENSDARG00000016674 TRIM35 (1 to many) ENSDARG00000022271 trim35-34 ENSDARG00000031534 TRIM35 (1 to many) ENSDARG00000033071 trim35-10 ENSDARG00000040230 TRIM35 (1 to many) ENSDARG00000052097 trim35-31 ENSDARG00000052255 trim35-3 ENSDARG00000055730 trim35-29 ENSDARG00000058958 TRIM35 (1 to many) ENSDARG00000060838 trim35-33 ENSDARG00000070847 trim35-20 ENSDARG00000071241 trim35-39 ENSDARG00000092407 TRIM35 (1 to many) ENSDARG00000093859 TRIM35 (1 to many) ENSDARG00000095913 TRIM35 (1 to many) ENSDARG00000099639 trim35-19 ENSDARG00000099684 trim35-24 ENSDARG00000100373 TRIM35 (1 to many) ENSDARG00000100721 TRIM35 (1 to many) ENSDARG00000101055 trim35-25 ENSDARG00000102219 TRIM35 (1 to many) ENSDARG00000102264 trim35-22 ENSDARG00000102303 trim35-21 ENSDARG00000102368 trim35-23 ENSDARG00000103154 TRIM35 (1 to many) ENSDARG00000104825 trim35-7	Compare expression	[+]
Euteleostomi	28 genes ENSDARG00000016674 TRIM35 (1 to many) ENSDARG00000022271 trim35-34 ENSDARG00000031534 TRIM35 (1 to many) ENSDARG00000033071 trim35-10 ENSDARG00000040230 TRIM35 (1 to many) ENSDARG00000042116 trim35-40 ENSDARG00000052097 trim35-31 ENSDARG00000052255 trim35-3 ENSDARG00000055730 trim35-29 ENSDARG00000058958 TRIM35 (1 to many) ENSDARG00000060838 trim35-33 ENSDARG00000070847 trim35-20 ENSDARG00000071241 trim35-39 ENSDARG00000092407 TRIM35 (1 to many) ENSDARG00000093859 TRIM35 (1 to many) ENSDARG00000095913 TRIM35 (1 to many) ENSDARG00000099639 trim35-19 ENSDARG00000099684 trim35-24 ENSDARG00000100373 TRIM35 (1 to many) ENSDARG00000100721 TRIM35 (1 to many) ENSDARG00000101055 trim35-25 ENSDARG00000101264 trim35-12 ENSDARG00000102219 TRIM35 (1 to many) ENSDARG00000102264 trim35-22 ENSDARG00000102303 trim35-21 ENSDARG00000102368 trim35-23 ENSDARG00000103154 TRIM35 (1 to many) ENSDARG00000104825 trim35-7	Compare expression	[+]

Paralogy information comes from OMA : ENSDARG00000039108.

Cross-references

Ensembl	ENSDARG00000039108 (TRIM35 (1 to many))
HGNC	HGNC:16285 (TRIM35 (1 to many))
ZFIN	ZDB-GENE-050327-87 (zgc:113250)
EMBL	CU855818
Uniprot/SPTREMBL	F1QKR8, F1QKR8_DANRE