D. rerio Gene: atp1a1a.3 - ENSDARG00000039131 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000039131
Nameatp1a1a.3
DescriptionATPase, Na+/K+ transporting, alpha 1a polypeptide, tandem duplicate 3 [Source:ZFIN;Acc:ZDB-GENE-001212-3]
OrganismDanio rerio (zebrafish)
Synonym(s)atp1a1l3, atp[a]1a2a

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
684
  • 684
97.71
  • 97.71
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.89e3
  • 1.89e3
  • 1.86e4
93.68
  • 93.68
  • 37.73
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.57e3
  • 2.57e3
91.40
  • 91.40
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.94e3
  • 3.94e3
86.83
  • 86.83
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
5.13e3
  • 5.13e3
  • 7.47e3
82.83
  • 82.83
  • 75.00
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
6.56e3
  • 6.56e3
  • 7.07e3
  • 7.39e3
  • 9.28e3
  • 9.70e3
78.02
  • 78.02
  • 76.34
  • 75.25
  • 68.94
  • 67.51
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
60.74
  • 60.74
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
  • 1.48e4
  • 2.17e4
59.59
  • 59.59
  • 50.32
  • 27.35
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.65
  • 54.65
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.15
  • 52.15
AEIR
  • AEIR
CL:0000851neuromast mantle cell
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
CL:0000852neuromast support cell
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.41
  • 48.41
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.58e4
  • 1.58e4
46.97
  • 46.97
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.41
  • 44.41
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.75e4
  • 1.75e4
41.27
  • 41.27
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.82e4
  • 1.82e4
39.19
  • 39.19
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.90e4
  • 1.90e4
36.38
  • 36.38
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.96e4
  • 1.96e4
34.50
  • 34.50
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.25e4
  • 2.25e4
24.69
  • 24.69
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLCU185242
EnsemblENSDARG00000039131 (atp1a1a.3)
Uniprot/SPTREMBLB8JKT0, B8JKT0_DANRE
ZFINZDB-GENE-001212-3 (atp1a1a.3)

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