D. rerio Gene: trpm3 - ENSDARG00000039181 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000039181
Nametrpm3
Descriptiontransient receptor potential cation channel, subfamily M, member 3 [Source:ZFIN;Acc:ZDB-GENE-060531-95]
OrganismDanio rerio (zebrafish)
Synonym(s)si:dkey-201c13.4, trpm6

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001886choroid plexus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
8.72e3
  • 8.72e3
70.80
  • 70.80
AEIR
  • AEIR
UBERON:0004703dorsal thalamus
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
9.96e3
  • 9.96e3
  • 1.12e4
  • 1.49e4
66.67
  • 66.67
  • 62.50
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002198neurohypophysis
  • ZFS:0000033Hatching:Long-pec
1.12e4
  • 1.12e4
62.50
  • 62.50
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
1.13e4
  • 1.13e4
  • 1.30e4
62.04
  • 62.04
  • 56.62
AEIR
  • AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.19e4
  • 1.19e4
  • 1.24e4
  • 1.29e4
60.00
  • 60.00
  • 58.33
  • 56.65
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.23e4
  • 1.23e4
58.92
  • 58.92
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.26e4
  • 1.26e4
  • 1.49e4
57.87
  • 57.87
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.63
  • 56.63
AEIR
  • AEIR
UBERON:0001904habenula
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.31e4
  • 1.31e4
  • 1.49e4
  • 1.49e4
56.24
  • 56.24
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002342neural crest
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
55.15
  • 55.15
AEIR
  • AEIR
UBERON:0005426lens vesicle
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.37e4
  • 1.37e4
  • 1.49e4
54.15
  • 54.15
  • 49.99
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
1.37e4
  • 1.37e4
  • 1.83e4
  • 2.07e4
  • 2.17e4
  • 2.35e4
53.99
  • 53.99
  • 38.60
  • 30.54
  • 27.41
  • 21.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000740retinal ganglion cell
  • ZFS:0000037Larval:Day 5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.92e4
  • 1.92e4
  • 2.22e4
35.59
  • 35.59
  • 25.59
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.11e4
  • 2.11e4
29.35
  • 29.35
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

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