D. rerio Gene: zgc:77439 - ENSDARG00000039211 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000039211
Namezgc:77439
Descriptionzgc:77439 [Source:ZFIN;Acc:ZDB-GENE-031010-24]
OrganismDanio rerio (zebrafish)
Synonym(s)fl33b06, sb:cb897, wu:fb60c01, wu:fb61f06, wu:fj09c12, wu:fl33b06
Orthologs(s)2 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0000066fully formed stage
390
  • 390
98.70
  • 98.70
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
584
  • 584
98.05
  • 98.05
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000106zygote stage
655
  • 655
  • 1.93e3
  • 3.15e3
  • 3.81e3
  • 3.92e3
  • 4.54e3
  • 4.62e3
  • 8.31e3
  • 8.32e3
  • 9.24e3
  • 9.61e3
  • 9.69e3
  • 1.05e4
  • 1.09e4
97.81
  • 97.81
  • 93.55
  • 89.47
  • 87.23
  • 86.86
  • 84.79
  • 84.52
  • 72.16
  • 72.15
  • 69.07
  • 67.81
  • 67.56
  • 64.80
  • 63.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
920
  • 920
96.92
  • 96.92
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.03e3
  • 1.03e3
96.57
  • 96.57
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.59e3
  • 1.59e3
94.69
  • 94.69
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.81e3
  • 1.81e3
  • 7.10e3
93.93
  • 93.93
  • 76.23
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
2.23e3
  • 2.23e3
  • 9.98e3
92.54
  • 92.54
  • 66.58
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000033Hatching:Long-pec
2.24e3
  • 2.24e3
  • 2.55e3
  • 2.76e3
  • 2.76e3
  • 2.91e3
  • 5.19e3
  • 5.45e3
  • 7.18e3
  • 7.71e3
  • 8.23e3
92.50
  • 92.50
  • 91.46
  • 90.78
  • 90.76
  • 90.27
  • 82.62
  • 81.75
  • 75.96
  • 74.17
  • 72.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
2.56e3
  • 2.56e3
  • 3.48e3
  • 6.25e3
91.42
  • 91.42
  • 88.35
  • 79.09
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.41e3
  • 3.41e3
88.59
  • 88.59
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
3.60e3
  • 3.60e3
  • 5.00e3
87.95
  • 87.95
  • 83.25
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.90e3
  • 3.90e3
86.95
  • 86.95
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
4.17e3
  • 4.17e3
86.04
  • 86.04
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.96e3
  • 4.96e3
83.39
  • 83.39
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.38e3
  • 5.38e3
81.99
  • 81.99
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
5.64e3
  • 5.64e3
  • 9.46e3
81.13
  • 81.13
  • 68.32
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
6.32e3
  • 6.32e3
78.83
  • 78.83
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
7.95e3
  • 7.95e3
  • 8.81e3
  • 8.98e3
  • 1.09e4
73.37
  • 73.37
  • 70.52
  • 69.94
  • 63.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.26e3
  • 8.26e3
72.33
  • 72.33
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
8.31e3
  • 8.31e3
  • 8.92e3
  • 1.04e4
  • 1.04e4
  • 1.15e4
  • 1.17e4
72.18
  • 72.18
  • 70.13
  • 65.20
  • 65.16
  • 61.65
  • 60.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
8.48e3
  • 8.48e3
71.61
  • 71.61
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.72e3
  • 8.72e3
70.80
  • 70.80
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
8.74e3
  • 8.74e3
70.74
  • 70.74
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
9.60e3
  • 9.60e3
  • 9.96e3
  • 1.07e4
  • 1.12e4
  • 1.14e4
  • 1.16e4
  • 1.16e4
  • 1.16e4
  • 1.20e4
67.85
  • 67.85
  • 66.65
  • 64.26
  • 62.48
  • 61.75
  • 61.09
  • 61.09
  • 61.09
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.78e3
  • 9.78e3
67.24
  • 67.24
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
1.02e4
  • 1.02e4
  • 1.18e4
  • 1.22e4
  • 1.28e4
65.78
  • 65.78
  • 60.62
  • 59.07
  • 57.01
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.14e4
  • 1.14e4
61.85
  • 61.85
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.14e4
  • 1.14e4
61.69
  • 61.69
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.25e4
  • 1.25e4
58.11
  • 58.11
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.41
  • 56.41
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi1 species1 geneCompare expression
Bilateria2 species2 genesCompare expression

Orthology information comes from OMA : ENSDARG00000039211.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Euteleostomi1 geneCompare expression
Opisthokonta4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000039211.

Cross-references

EnsemblENSDARG00000039211 (zgc:77439)
ZFINZDB-GENE-031010-24 (zgc:77439)
EMBLAY394972, BC066367, CR853281
Uniprot/SPTREMBLE9QD32, E9QD32_DANRE, E9QF06, E9QF06_DANRE, Q6NZ32, Q6NZ32_DANRE

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