D. rerio Gene: rbm25a - ENSDARG00000039266 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000039266
Namerbm25a
DescriptionRNA binding motif protein 25a [Source:ZFIN;Acc:ZDB-GENE-090312-142]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-12d10.5

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
597
  • 597
  • 1.21e3
98.00
  • 98.00
  • 95.94
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
921
  • 921
  • 1.40e4
96.92
  • 96.92
  • 52.96
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
941
  • 941
  • 1.83e3
  • 7.97e3
  • 1.08e4
96.85
  • 96.85
  • 93.87
  • 73.32
  • 63.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.10e3
  • 1.10e3
96.33
  • 96.33
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
1.42e3
  • 1.42e3
  • 3.83e3
  • 8.99e3
  • 9.86e3
  • 1.08e4
  • 1.36e4
  • 1.78e4
95.26
  • 95.26
  • 87.16
  • 69.91
  • 67.00
  • 63.83
  • 54.37
  • 40.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.91e3
  • 1.91e3
93.61
  • 93.61
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
2.01e3
  • 2.01e3
93.28
  • 93.28
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.54e3
  • 2.54e3
91.50
  • 91.50
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.61e3
  • 2.61e3
91.28
  • 91.28
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.72e3
  • 2.72e3
90.90
  • 90.90
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.86e3
  • 2.86e3
90.44
  • 90.44
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.94e3
  • 2.94e3
90.15
  • 90.15
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
3.20e3
  • 3.20e3
  • 6.26e3
89.30
  • 89.30
  • 79.04
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.46e3
  • 3.46e3
88.41
  • 88.41
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.60e3
  • 3.60e3
87.94
  • 87.94
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.91e3
  • 3.91e3
86.92
  • 86.92
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
4.15e3
  • 4.15e3
  • 5.82e3
  • 1.13e4
  • 1.16e4
  • 1.16e4
86.10
  • 86.10
  • 80.52
  • 62.25
  • 61.28
  • 61.01
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.99e3
  • 4.99e3
83.28
  • 83.28
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
5.63e3
  • 5.63e3
81.14
  • 81.14
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.66e3
  • 5.66e3
81.05
  • 81.05
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
5.74e3
  • 5.74e3
80.80
  • 80.80
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
5.81e3
  • 5.81e3
  • 7.79e3
  • 1.28e4
80.55
  • 80.55
  • 73.92
  • 57.17
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.11e3
  • 6.11e3
79.55
  • 79.55
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.20e3
  • 6.20e3
79.23
  • 79.23
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.28e3
  • 7.28e3
75.64
  • 75.64
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
8.15e3
  • 8.15e3
72.72
  • 72.72
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000106zygote stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
8.30e3
  • 8.30e3
  • 9.88e3
  • 1.13e4
  • 1.15e4
  • 1.18e4
  • 1.46e4
  • 1.51e4
  • 1.52e4
  • 1.52e4
  • 1.52e4
72.22
  • 72.22
  • 66.91
  • 62.03
  • 61.40
  • 60.52
  • 51.26
  • 49.54
  • 49.15
  • 49.14
  • 49.07
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.87
  • 65.87
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.04e4
  • 1.04e4
65.12
  • 65.12
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.12e4
  • 1.12e4
  • 1.23e4
  • 1.40e4
62.34
  • 62.34
  • 58.81
  • 53.17
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.21e4
  • 1.21e4
59.59
  • 59.59
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.22e4
  • 1.22e4
59.19
  • 59.19
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.28e4
  • 1.28e4
57.11
  • 57.11
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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