D. rerio Gene: ssbp1 - ENSDARG00000039350 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000039350
Namessbp1
Descriptionsingle-stranded DNA binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-050417-340]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:110325

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.95e3
  • 1.95e3
93.46
  • 93.46
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.38e3
  • 2.38e3
92.04
  • 92.04
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
2.50e3
  • 2.50e3
  • 3.39e3
  • 4.15e3
  • 4.32e3
  • 4.58e3
  • 5.22e3
  • 5.72e3
  • 5.96e3
  • 6.45e3
  • 7.14e3
91.64
  • 91.64
  • 88.65
  • 86.11
  • 85.55
  • 84.66
  • 82.53
  • 80.85
  • 80.04
  • 78.41
  • 76.11
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
2.79e3
  • 2.79e3
  • 3.04e3
  • 4.20e3
  • 4.75e3
  • 4.98e3
  • 5.22e3
90.65
  • 90.65
  • 89.82
  • 85.94
  • 84.11
  • 83.34
  • 82.54
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.97e3
  • 2.97e3
90.06
  • 90.06
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.30e3
  • 3.30e3
88.95
  • 88.95
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
3.58e3
  • 3.58e3
  • 4.43e3
  • 5.40e3
  • 5.47e3
  • 5.64e3
88.00
  • 88.00
  • 85.16
  • 81.93
  • 81.68
  • 81.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
3.94e3
  • 3.94e3
  • 5.71e3
86.82
  • 86.82
  • 80.90
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.94e3
  • 3.94e3
86.81
  • 86.81
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
3.95e3
  • 3.95e3
  • 4.07e3
  • 5.67e3
86.76
  • 86.76
  • 86.38
  • 81.01
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.25e3
  • 4.25e3
85.78
  • 85.78
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • UBERON:0000106zygote stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
4.67e3
  • 4.67e3
  • 4.80e3
  • 4.98e3
  • 5.12e3
  • 5.46e3
  • 5.62e3
  • 6.04e3
  • 6.43e3
  • 6.54e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.97e3
  • 7.03e3
  • 7.11e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 8.03e3
  • 8.31e3
  • 8.96e3
  • 8.96e3
  • 9.59e3
  • 1.01e4
  • 1.05e4
  • 1.15e4
84.37
  • 84.37
  • 83.92
  • 83.33
  • 82.84
  • 81.71
  • 81.18
  • 79.77
  • 78.46
  • 78.12
  • 77.77
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.66
  • 76.46
  • 76.19
  • 74.99
  • 74.99
  • 73.52
  • 73.13
  • 72.17
  • 69.99
  • 69.99
  • 67.88
  • 66.35
  • 64.73
  • 61.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
4.77e3
  • 4.77e3
84.03
  • 84.03
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
4.86e3
  • 4.86e3
83.73
  • 83.73
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.87e3
  • 4.87e3
83.71
  • 83.71
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
5.50e3
  • 5.50e3
81.59
  • 81.59
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.55e3
  • 5.55e3
81.44
  • 81.44
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.70e3
  • 5.70e3
80.91
  • 80.91
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
5.87e3
  • 5.87e3
  • 7.76e3
80.33
  • 80.33
  • 74.02
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
5.88e3
  • 5.88e3
  • 6.50e3
80.31
  • 80.31
  • 78.25
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.92e3
  • 5.92e3
80.17
  • 80.17
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.99e3
  • 5.99e3
79.95
  • 79.95
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.99e3
  • 5.99e3
79.93
  • 79.93
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
6.24e3
  • 6.24e3
79.12
  • 79.12
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
6.89e3
  • 6.89e3
76.94
  • 76.94
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
6.95e3
  • 6.95e3
76.75
  • 76.75
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.97e3
  • 6.97e3
76.65
  • 76.65
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
7.09e3
  • 7.09e3
  • 8.70e3
  • 1.08e4
76.27
  • 76.27
  • 70.87
  • 63.73
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
7.18e3
  • 7.18e3
75.97
  • 75.97
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
7.62e3
  • 7.62e3
74.50
  • 74.50
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
8.87e3
  • 8.87e3
  • 8.92e3
70.30
  • 70.30
  • 70.14
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBX546489
EnsemblENSDARG00000039350 (ssbp1)
Uniprot/SPTREMBLB8A5I7, B8A5I7_DANRE
ZFINZDB-GENE-050417-340 (ssbp1)

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