D. rerio Gene: ska1 - ENSDARG00000039354 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000039354
Nameska1
Descriptionspindle and kinetochore associated complex subunit 1 [Source:ZFIN;Acc:ZDB-GENE-040718-334]
OrganismDanio rerio (zebrafish)
Synonym(s)fc20h04, wu:fc20h04, zgc:92321

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.02e3
  • 1.02e3
96.57
  • 96.57
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
1.20e3
  • 1.20e3
  • 2.49e3
  • 3.13e3
  • 3.27e3
  • 6.93e3
95.99
  • 95.99
  • 91.65
  • 89.54
  • 89.04
  • 76.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.97e3
  • 1.97e3
93.39
  • 93.39
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.04e3
  • 2.04e3
93.17
  • 93.17
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.32e3
  • 2.32e3
92.24
  • 92.24
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.69e3
  • 3.69e3
87.64
  • 87.64
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.33e3
  • 4.33e3
85.52
  • 85.52
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
4.37e3
  • 4.37e3
  • 4.70e3
  • 5.68e3
  • 6.45e3
  • 6.78e3
  • 9.42e3
85.37
  • 85.37
  • 84.26
  • 80.98
  • 78.40
  • 77.31
  • 68.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.92e3
  • 4.92e3
83.53
  • 83.53
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
5.57e3
  • 5.57e3
  • 8.48e3
  • 9.62e3
  • 9.83e3
  • 1.01e4
  • 1.04e4
  • 1.07e4
  • 1.11e4
  • 1.24e4
  • 1.37e4
81.35
  • 81.35
  • 71.60
  • 67.80
  • 67.09
  • 66.24
  • 65.17
  • 64.03
  • 62.79
  • 58.34
  • 54.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.69e3
  • 5.69e3
80.97
  • 80.97
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
5.79e3
  • 5.79e3
80.61
  • 80.61
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000032Pharyngula:High-pec
  • UBERON:0000106zygote stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
5.97e3
  • 5.97e3
  • 1.06e4
  • 1.11e4
  • 1.14e4
  • 1.15e4
  • 1.16e4
  • 1.21e4
  • 1.29e4
  • 1.35e4
  • 1.35e4
  • 1.38e4
  • 1.39e4
  • 1.45e4
  • 1.50e4
  • 1.52e4
  • 1.53e4
  • 1.55e4
80.00
  • 80.00
  • 64.43
  • 62.70
  • 61.84
  • 61.57
  • 61.31
  • 59.44
  • 56.71
  • 54.91
  • 54.69
  • 53.84
  • 53.30
  • 51.34
  • 49.92
  • 49.24
  • 48.83
  • 48.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
5.98e3
  • 5.98e3
  • 6.22e3
  • 9.13e3
  • 1.14e4
  • 1.20e4
  • 1.23e4
  • 1.25e4
  • 1.25e4
  • 1.25e4
  • 1.27e4
  • 1.39e4
79.99
  • 79.99
  • 79.16
  • 69.43
  • 61.88
  • 59.98
  • 58.80
  • 58.31
  • 58.31
  • 58.31
  • 57.47
  • 53.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
6.50e3
  • 6.50e3
  • 7.45e3
  • 1.17e4
78.24
  • 78.24
  • 75.05
  • 60.84
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.08e3
  • 7.08e3
76.31
  • 76.31
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.38e3
  • 7.38e3
75.29
  • 75.29
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
7.51e3
  • 7.51e3
  • 1.83e4
74.87
  • 74.87
  • 38.61
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
8.21e3
  • 8.21e3
72.51
  • 72.51
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
8.83e3
  • 8.83e3
70.44
  • 70.44
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.92e3
  • 8.92e3
70.14
  • 70.14
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.02e3
  • 9.02e3
69.79
  • 69.79
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
  • 2.09e4
65.22
  • 65.22
  • 30.07
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
  • 1.87e4
65.01
  • 65.01
  • 37.53
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.44
  • 64.44
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.25e4
  • 1.25e4
  • 1.25e4
58.31
  • 58.31
  • 58.31
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.26e4
  • 1.26e4
  • 1.39e4
  • 1.61e4
57.78
  • 57.78
  • 53.44
  • 46.23
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.82
  • 55.82
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.33
  • 54.33
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
1.43e4
  • 1.43e4
51.99
  • 51.99
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.94
  • 49.94
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.36
  • 48.36
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
47.96
  • 47.96
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
44.11
  • 44.11
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.80e4
  • 1.80e4
39.74
  • 39.74
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.15e4
  • 2.15e4
28.10
  • 28.10
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC076006
EnsemblENSDARG00000039354 (ska1)
Uniprot/SWISSPROTQ6DHG8, SKA1_DANRE
ZFINZDB-GENE-040718-334 (ska1)

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