D. rerio Gene: zgc:111992 - ENSDARG00000039477 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000039477
Namezgc:111992
Descriptionzgc:111992 [Source:ZFIN;Acc:ZDB-GENE-050320-30]
OrganismDanio rerio (zebrafish)
Orthologs(s)15 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.61e3
  • 1.61e3
94.63
  • 94.63
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
5.77e3
  • 5.77e3
  • 1.17e4
  • 1.22e4
  • 1.22e4
  • 1.24e4
80.67
  • 80.67
  • 60.70
  • 59.08
  • 59.08
  • 58.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.89e3
  • 7.89e3
73.58
  • 73.58
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.74e3
  • 9.74e3
67.38
  • 67.38
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.94
  • 58.94
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
1.38e4
  • 1.38e4
53.67
  • 53.67
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.42e4
  • 1.42e4
52.48
  • 52.48
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
1.49e4
  • 1.49e4
  • 1.81e4
50.02
  • 50.02
  • 39.42
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.64e4
  • 1.64e4
45.22
  • 45.22
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.89
  • 44.89
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
44.83
  • 44.83
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.69e4
  • 1.69e4
43.27
  • 43.27
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.70e4
  • 1.70e4
  • 1.95e4
43.10
  • 43.10
  • 34.65
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
40.52
  • 40.52
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
1.81e4
  • 1.81e4
  • 1.83e4
  • 1.95e4
  • 2.04e4
  • 2.05e4
39.34
  • 39.34
  • 38.60
  • 34.69
  • 31.77
  • 31.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.83e4
  • 1.83e4
38.60
  • 38.60
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
1.88e4
  • 1.88e4
37.02
  • 37.02
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
36.80
  • 36.80
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.89e4
  • 1.89e4
  • 2.05e4
36.78
  • 36.78
  • 31.52
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.98e4
  • 1.98e4
33.83
  • 33.83
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.04e4
  • 2.04e4
31.76
  • 31.76
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Cross-references

EnsemblENSDARG00000039477 (zgc:111992)
ZFINZDB-GENE-050320-30 (zgc:111992)
EMBLBX649429
Uniprot/SPTREMBLF1Q9K3, F1Q9K3_DANRE

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