D. rerio Gene: atf4a - ENSDARG00000039515 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000039515
Nameatf4a
Descriptionactivating transcription factor 4a [Source:ZFIN;Acc:ZDB-GENE-040426-2340]
OrganismDanio rerio (zebrafish)
Synonym(s)atf4, atf4b1, wu:fj01c08, wu:fk30b04, zgc:85951

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
212
  • 212
99.29
  • 99.29
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
263
  • 263
  • 3.13e3
99.12
  • 99.12
  • 89.52
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
291
  • 291
99.03
  • 99.03
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
344
  • 344
  • 526
  • 601
  • 662
  • 980
  • 1.51e3
  • 1.57e3
  • 1.80e3
  • 2.00e3
  • 2.06e3
98.85
  • 98.85
  • 98.24
  • 97.99
  • 97.79
  • 96.72
  • 94.94
  • 94.76
  • 93.97
  • 93.30
  • 93.11
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
362
  • 362
98.79
  • 98.79
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
367
  • 367
98.77
  • 98.77
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
368
  • 368
98.77
  • 98.77
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
393
  • 393
  • 918
  • 1.12e4
98.69
  • 98.69
  • 96.93
  • 62.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
395
  • 395
98.68
  • 98.68
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
417
  • 417
98.61
  • 98.61
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
424
  • 424
98.58
  • 98.58
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
490
  • 490
  • 662
  • 1.28e3
  • 1.45e3
  • 3.01e3
  • 3.16e3
98.36
  • 98.36
  • 97.79
  • 95.72
  • 95.16
  • 89.92
  • 89.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
498
  • 498
98.34
  • 98.34
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
527
  • 527
98.24
  • 98.24
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
531
  • 531
98.23
  • 98.23
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
613
  • 613
97.95
  • 97.95
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
709
  • 709
  • 956
97.63
  • 97.63
  • 96.80
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.03e3
  • 1.03e3
  • 1.31e3
  • 2.67e3
96.56
  • 96.56
  • 95.61
  • 91.07
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.07e3
  • 1.07e3
  • 1.28e3
  • 1.75e3
  • 1.86e3
96.41
  • 96.41
  • 95.70
  • 94.15
  • 93.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • UBERON:0000106zygote stage
1.15e3
  • 1.15e3
  • 1.41e3
  • 1.47e3
  • 1.50e3
  • 1.59e3
  • 1.69e3
  • 1.70e3
  • 1.86e3
  • 1.91e3
  • 1.93e3
  • 2.01e3
  • 2.02e3
  • 2.80e3
  • 4.98e3
  • 6.54e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.97e3
  • 7.03e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 8.96e3
  • 8.96e3
  • 1.24e4
96.14
  • 96.14
  • 95.28
  • 95.07
  • 94.97
  • 94.67
  • 94.33
  • 94.31
  • 93.78
  • 93.61
  • 93.54
  • 93.28
  • 93.25
  • 90.63
  • 83.33
  • 78.12
  • 77.77
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.66
  • 76.46
  • 74.99
  • 74.99
  • 73.52
  • 69.99
  • 69.99
  • 58.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
1.57e3
  • 1.57e3
  • 5.05e3
  • 1.09e4
94.75
  • 94.75
  • 83.08
  • 63.49
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.90e3
  • 1.90e3
93.65
  • 93.65
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.91e3
  • 1.91e3
93.60
  • 93.60
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
2.12e3
  • 2.12e3
  • 2.75e3
92.89
  • 92.89
  • 90.79
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
2.13e3
  • 2.13e3
92.86
  • 92.86
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.23e3
  • 2.23e3
92.53
  • 92.53
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.40e3
  • 2.40e3
91.95
  • 91.95
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.79e3
  • 4.79e3
83.95
  • 83.95
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.37e3
  • 7.37e3
75.34
  • 75.34
AEIR
  • AEIR
UBERON:0002100trunk
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
8.55e3
  • 8.55e3
71.39
  • 71.39
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
49.03
  • 49.03
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC067714
EnsemblENSDARG00000039515 (atf4a)
Uniprot/SWISSPROTATF4_DANRE, Q6NW59
ZFINZDB-GENE-040426-2340 (atf4a)

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