D. rerio Gene: ssx2ipa - ENSDARG00000039521 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000039521
Namessx2ipa
Descriptionsynovial sarcoma, X breakpoint 2 interacting protein a [Source:ZFIN;Acc:ZDB-GENE-040426-1756]
OrganismDanio rerio (zebrafish)
Synonym(s)ssc2ip, ssx2ip, zgc:73314

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
442
  • 442
98.52
  • 98.52
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
641
  • 641
97.86
  • 97.86
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
1.38e3
  • 1.38e3
  • 3.01e3
  • 3.33e3
  • 3.58e3
  • 9.23e3
95.37
  • 95.37
  • 89.94
  • 88.86
  • 88.03
  • 69.09
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.86e3
  • 2.86e3
90.42
  • 90.42
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
4.45e3
  • 4.45e3
85.09
  • 85.09
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
4.51e3
  • 4.51e3
84.92
  • 84.92
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.63e3
  • 4.63e3
84.51
  • 84.51
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
4.93e3
  • 4.93e3
  • 7.71e3
  • 1.39e4
83.49
  • 83.49
  • 74.18
  • 53.51
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
6.37e3
  • 6.37e3
  • 9.54e3
78.67
  • 78.67
  • 68.06
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000066fully formed stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000049segmentation
  • UBERON:0000104life cycle
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
6.60e3
  • 6.60e3
  • 1.36e4
  • 1.46e4
  • 1.48e4
  • 1.48e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.50e4
  • 1.50e4
  • 1.50e4
  • 1.52e4
  • 1.53e4
  • 1.56e4
  • 1.58e4
  • 1.61e4
77.89
  • 77.89
  • 54.31
  • 51.12
  • 50.44
  • 50.38
  • 50.22
  • 50.21
  • 49.95
  • 49.92
  • 49.80
  • 49.80
  • 49.09
  • 48.67
  • 47.83
  • 47.14
  • 46.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.76e3
  • 6.76e3
77.38
  • 77.38
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
7.47e3
  • 7.47e3
  • 1.10e4
  • 1.24e4
  • 1.31e4
  • 1.38e4
  • 1.38e4
74.99
  • 74.99
  • 63.20
  • 58.51
  • 56.15
  • 53.70
  • 53.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.48e3
  • 7.48e3
74.96
  • 74.96
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
7.93e3
  • 7.93e3
73.45
  • 73.45
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
7.99e3
  • 7.99e3
73.24
  • 73.24
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.34e3
  • 8.34e3
72.09
  • 72.09
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
8.88e3
  • 8.88e3
  • 9.31e3
  • 1.00e4
  • 1.09e4
  • 1.35e4
  • 1.48e4
  • 1.53e4
  • 1.54e4
70.27
  • 70.27
  • 68.84
  • 66.39
  • 63.35
  • 54.95
  • 50.28
  • 48.71
  • 48.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
9.33e3
  • 9.33e3
68.75
  • 68.75
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.64e3
  • 9.64e3
67.71
  • 67.71
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.75e3
  • 9.75e3
67.37
  • 67.37
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.01e4
  • 1.01e4
  • 1.19e4
66.08
  • 66.08
  • 60.07
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.17
  • 65.17
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.13e4
  • 1.13e4
  • 1.34e4
  • 1.56e4
62.15
  • 62.15
  • 55.29
  • 47.89
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.89
  • 61.89
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.43
  • 61.43
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.95
  • 58.95
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.27e4
  • 1.27e4
  • 1.39e4
57.50
  • 57.50
  • 53.45
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

EMBLCU693488
EnsemblENSDARG00000039521 (ssx2ipa)
Uniprot/SPTREMBLX1WF78, X1WF78_DANRE, X1WH62, X1WH62_DANRE
ZFINZDB-GENE-040426-1756 (ssx2ipa)

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