D. rerio Gene: emx1 - ENSDARG00000039569 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000039569
Nameemx1
Descriptionempty spiracles homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-031007-7]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:101821

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.07e3
  • 3.07e3
89.63717
  • 89.63717
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
5.76e3
  • 5.76e3
  • 9.86e3
  • 1.38e4
  • 1.48e4
80.54711
  • 80.54711
  • 66.66666
  • 53.31307
  • 49.97465
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000203pallium
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
5.92e3
  • 5.92e3
  • 9.86e3
  • 1.48e4
  • 1.48e4
  • 1.48e4
80.00000
  • 80.00000
  • 66.66666
  • 50.00169
  • 50.00169
  • 50.00169
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
6.97e3
  • 6.97e3
  • 7.89e3
  • 8.63e3
  • 9.05e3
  • 9.05e3
  • 9.87e3
  • 9.87e3
  • 1.11e4
76.46045
  • 76.46045
  • 73.32320
  • 70.82487
  • 69.42923
  • 69.42923
  • 66.65314
  • 66.65314
  • 62.47802
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
7.40e3
  • 7.40e3
  • 1.23e4
  • 1.27e4
  • 1.32e4
74.98308
  • 74.98308
  • 58.32826
  • 57.13609
  • 55.53188
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.75e3
  • 8.75e3
70.43922
  • 70.43922
AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
8.88e3
  • 8.88e3
  • 1.09e4
  • 1.40e4
69.98310
  • 69.98310
  • 63.13761
  • 52.75244
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
  • 1.57e4
  • 2.14e4
62.49830
  • 62.49830
  • 46.79250
  • 27.65957
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
1.18e4
  • 1.18e4
  • 1.37e4
59.98310
  • 59.98310
  • 53.82925
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
1.21e4
  • 1.21e4
  • 1.22e4
  • 1.24e4
  • 1.25e4
  • 1.41e4
  • 1.54e4
  • 1.56e4
  • 1.64e4
  • 1.76e4
59.16719
  • 59.16719
  • 58.65344
  • 58.20854
  • 57.89662
  • 52.18877
  • 47.93355
  • 47.24891
  • 44.68781
  • 40.40921
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001898hypothalamus
  • ZFS:0000029Pharyngula:Prim-5
1.21e4
  • 1.21e4
59.07907
  • 59.07907
AEIR
  • AEIR
UBERON:0001049neural tube
  • ZFS:0000029Pharyngula:Prim-5
1.29e4
  • 1.29e4
56.49131
  • 56.49131
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
54.68541
  • 54.68541
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.35e4
  • 1.35e4
54.39623
  • 54.39623
AEIR
  • AEIR
UBERON:2007026forebrain neural keel
  • ZFS:0000023Segmentation:1-4 somites
1.37e4
  • 1.37e4
53.55284
  • 53.55284
AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000027Segmentation:20-25 somites
1.38e4
  • 1.38e4
53.31307
  • 53.31307
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
1.44e4
  • 1.44e4
  • 1.45e4
  • 1.45e4
  • 1.49e4
  • 1.49e4
  • 1.72e4
  • 1.76e4
  • 1.76e4
  • 1.77e4
  • 1.82e4
51.16907
  • 51.16907
  • 50.99945
  • 50.89926
  • 49.79382
  • 49.65337
  • 41.77422
  • 40.43013
  • 40.42179
  • 40.25570
  • 38.32145
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
1.45e4
  • 1.45e4
50.99949
  • 50.99949
AEIR
  • AEIR
UBERON:2007031anterior neural rod
  • ZFS:0000025Segmentation:10-13 somites
1.48e4
  • 1.48e4
50.00169
  • 50.00169
AEIR
  • AEIR
UBERON:0009610forebrain neural plate
  • ZFS:0000022Gastrula:Bud
1.48e4
  • 1.48e4
49.99831
  • 49.99831
AEIR
  • AEIR
UBERON:2001055pronephric duct opening
  • ZFS:0000027Segmentation:20-25 somites
1.48e4
  • 1.48e4
49.99831
  • 49.99831
AEIR
  • AEIR
UBERON:0014371future telencephalon
  • ZFS:0000023Segmentation:1-4 somites
1.48e4
  • 1.48e4
49.98310
  • 49.98310
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
47.87799
  • 47.87799
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.59e4
  • 1.59e4
  • 1.59e4
  • 1.71e4
46.29142
  • 46.29142
  • 46.15984
  • 42.34242
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
2.00e4
  • 2.00e4
32.24613
  • 32.24613
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.50e4
  • 2.50e4
15.51508
  • 15.51508
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLAF534523, BC134029, BX571943
EnsemblENSDARG00000039569 (emx1)
Uniprot/SPTREMBLA3KNV6, A3KNV6_DANRE
Uniprot/SWISSPROTEMX1_DANRE, Q804S6
ZFINZDB-GENE-031007-7 (emx1)

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