D. rerio Gene: atoh1c - ENSDARG00000039602 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000039602
Nameatoh1c
Descriptionatonal bHLH transcription factor 1c [Source:ZFIN;Acc:ZDB-GENE-090805-1]
OrganismDanio rerio (zebrafish)
Synonym(s)zath1c

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:2000188corpus cerebelli
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.17e4
  • 1.17e4
  • 2.84e4
60.77
  • 60.77
  • 4.89
AEIR
  • AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.17e4
  • 1.17e4
  • 1.25e4
  • 1.49e4
  • 1.49e4
60.70
  • 60.70
  • 58.31
  • 49.99
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.24
  • 57.24
AEIR
  • AEIR
UBERON:2000913molecular layer valvula cerebelli
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
1.61e4
  • 1.61e4
46.21
  • 46.21
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.64e4
  • 1.64e4
  • 2.39e4
45.06
  • 45.06
  • 20.00
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
1.77e4
  • 1.77e4
  • 1.81e4
  • 2.24e4
  • 2.25e4
  • 2.27e4
40.76
  • 40.76
  • 39.24
  • 24.84
  • 24.52
  • 24.02
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
2.06e4
  • 2.06e4
30.89
  • 30.89
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.70e4
  • 2.70e4
9.43
  • 9.43
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLCR792429
EnsemblENSDARG00000039602 (atoh1c)
Uniprot/SPTREMBLF1Q7A7, F1Q7A7_DANRE, X1WGL3, X1WGL3_DANRE
ZFINZDB-GENE-090805-1 (atoh1c)

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